Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC16.65■□□□□ 0.26
Sox1P53783 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Gm43474-201ENSMUST00000196415 774 ntBASIC16.65■□□□□ 0.26
Sox1P53783 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Sox1P53783 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
Sox1P53783 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox1P53783 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
Sox1P53783 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.26
Sox1P53783 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.26
Sox1P53783 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sox1P53783 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sox1P53783 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sox1P53783 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Sox1P53783 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Sox1P53783 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sox1P53783 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sox1P53783 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Sox1P53783 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC16.64■□□□□ 0.25
Sox1P53783 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC16.64■□□□□ 0.25
Sox1P53783 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC16.64■□□□□ 0.25
Sox1P53783 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Sox1P53783 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Sox1P53783 AC126408.1-201ENSMUST00000225184 523 ntBASIC16.64■□□□□ 0.25
Sox1P53783 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sox1P53783 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sox1P53783 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sox1P53783 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC16.63■□□□□ 0.25
Sox1P53783 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Sox1P53783 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Sox1P53783 Gm11745-201ENSMUST00000121669 448 ntBASIC16.63■□□□□ 0.25
Sox1P53783 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Sox1P53783 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC16.63■□□□□ 0.25
Sox1P53783 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC16.63■□□□□ 0.25
Sox1P53783 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC16.63■□□□□ 0.25
Sox1P53783 AC140397.2-201ENSMUST00000224213 834 ntBASIC16.63■□□□□ 0.25
Sox1P53783 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Gm2423-201ENSMUST00000074863 733 ntBASIC16.63■□□□□ 0.25
Sox1P53783 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Sox1P53783 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Sox1P53783 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sox1P53783 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC16.62■□□□□ 0.25
Sox1P53783 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.62■□□□□ 0.25
Sox1P53783 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC16.62■□□□□ 0.25
Sox1P53783 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC16.62■□□□□ 0.25
Sox1P53783 AC124732.2-201ENSMUST00000221977 316 ntBASIC16.62■□□□□ 0.25
Sox1P53783 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Gm15222-202ENSMUST00000228667 1726 ntBASIC16.62■□□□□ 0.25
Sox1P53783 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sox1P53783 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sox1P53783 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Sox1P53783 Gfra2-202ENSMUST00000227633 1480 ntBASIC16.61■□□□□ 0.25
Sox1P53783 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sox1P53783 Gm13597-201ENSMUST00000121239 375 ntBASIC16.61■□□□□ 0.25
Sox1P53783 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sox1P53783 Mir6990-201ENSMUST00000183724 91 ntBASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms