Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC13.47□□□□□ -0.25
Sdc1P18828 Nespas-201ENSMUST00000143738 1083 ntBASIC13.47□□□□□ -0.25
Sdc1P18828 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC13.47□□□□□ -0.25
Sdc1P18828 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Rps24-207ENSMUST00000224568 714 ntBASIC13.47□□□□□ -0.25
Sdc1P18828 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
Sdc1P18828 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Sdc1P18828 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Gm10584-201ENSMUST00000207036 2628 ntBASIC13.46□□□□□ -0.25
Sdc1P18828 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Sdc1P18828 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Sdc1P18828 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC13.46□□□□□ -0.25
Sdc1P18828 Gm29241-201ENSMUST00000189260 1096 ntBASIC13.46□□□□□ -0.25
Sdc1P18828 Gm6420-201ENSMUST00000193885 723 ntBASIC13.46□□□□□ -0.25
Sdc1P18828 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sdc1P18828 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Sdc1P18828 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
Sdc1P18828 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC13.45□□□□□ -0.26
Sdc1P18828 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC13.45□□□□□ -0.26
Sdc1P18828 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Sdc1P18828 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Sdc1P18828 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Sdc1P18828 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
Sdc1P18828 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Sdc1P18828 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC13.45□□□□□ -0.26
Sdc1P18828 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Sdc1P18828 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Sdc1P18828 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Sdc1P18828 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC13.44□□□□□ -0.26
Sdc1P18828 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Sdc1P18828 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Sdc1P18828 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Sdc1P18828 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Sdc1P18828 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Sdc1P18828 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Sdc1P18828 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Sdc1P18828 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Sdc1P18828 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Sdc1P18828 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Sdc1P18828 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Sdc1P18828 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Sdc1P18828 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC13.44□□□□□ -0.26
Sdc1P18828 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Sdc1P18828 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC13.44□□□□□ -0.26
Sdc1P18828 Gm11643-201ENSMUST00000119578 864 ntBASIC13.44□□□□□ -0.26
Sdc1P18828 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
Sdc1P18828 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Sdc1P18828 Cdc34b-202ENSMUST00000188741 1252 ntBASIC13.44□□□□□ -0.26
Sdc1P18828 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Sdc1P18828 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Sdc1P18828 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Sdc1P18828 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Sdc1P18828 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC13.44□□□□□ -0.26
Sdc1P18828 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Sdc1P18828 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms