Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx1P18111 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx1P18111 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx1P18111 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx1P18111 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
Cdx1P18111 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Cdx1P18111 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Cdx1P18111 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Cdx1P18111 AL672049.1-201ENSMUST00000197943 91 ntBASIC13.22□□□□□ -0.29
Cdx1P18111 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
Cdx1P18111 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC13.22□□□□□ -0.29
Cdx1P18111 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Cdx1P18111 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC13.22□□□□□ -0.29
Cdx1P18111 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx1P18111 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cdx1P18111 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Cdx1P18111 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cdx1P18111 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cdx1P18111 Gm36858-201ENSMUST00000194501 2391 ntBASIC13.21□□□□□ -0.29
Cdx1P18111 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cdx1P18111 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Cdx1P18111 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cdx1P18111 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cdx1P18111 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC13.21□□□□□ -0.29
Cdx1P18111 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC13.21□□□□□ -0.29
Cdx1P18111 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cdx1P18111 AC135963.1-201ENSMUST00000211640 717 ntBASIC13.21□□□□□ -0.29
Cdx1P18111 AC163280.1-201ENSMUST00000228194 1100 ntBASIC13.21□□□□□ -0.29
Cdx1P18111 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Cdx1P18111 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cdx1P18111 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Cdx1P18111 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Cdx1P18111 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cdx1P18111 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cdx1P18111 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cdx1P18111 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cdx1P18111 Gm10167-201ENSMUST00000150411 1479 ntBASIC13.21□□□□□ -0.3
Cdx1P18111 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Cdx1P18111 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cdx1P18111 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cdx1P18111 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cdx1P18111 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cdx1P18111 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Cdx1P18111 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Cdx1P18111 Prob1-201ENSMUST00000097619 3021 ntBASIC13.21□□□□□ -0.3
Cdx1P18111 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Cdx1P18111 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Cdx1P18111 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC13.2□□□□□ -0.3
Cdx1P18111 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC13.2□□□□□ -0.3
Cdx1P18111 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Cdx1P18111 AC107452.1-201ENSMUST00000227963 481 ntBASIC13.2□□□□□ -0.3
Cdx1P18111 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Cdx1P18111 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Cdx1P18111 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Cdx1P18111 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC13.2□□□□□ -0.3
Cdx1P18111 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Gm10584-201ENSMUST00000207036 2628 ntBASIC13.2□□□□□ -0.3
Cdx1P18111 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Cdx1P18111 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx1P18111 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx1P18111 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx1P18111 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx1P18111 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx1P18111 Gm37736-201ENSMUST00000193564 2802 ntBASIC13.19□□□□□ -0.3
Cdx1P18111 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms