Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msh3P13705 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Msh3P13705 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msh3P13705 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
Msh3P13705 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC17.97■□□□□ 0.47
Msh3P13705 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC17.97■□□□□ 0.47
Msh3P13705 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Gm15794-201ENSMUST00000120182 631 ntBASIC17.97■□□□□ 0.47
Msh3P13705 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.97■□□□□ 0.47
Msh3P13705 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.97■□□□□ 0.47
Msh3P13705 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Msh3P13705 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh3P13705 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
Msh3P13705 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
Msh3P13705 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC17.96■□□□□ 0.47
Msh3P13705 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC17.96■□□□□ 0.47
Msh3P13705 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.96■□□□□ 0.47
Msh3P13705 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Gm45328-201ENSMUST00000210942 917 ntBASIC17.96■□□□□ 0.47
Msh3P13705 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Msh3P13705 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msh3P13705 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.96■□□□□ 0.46
Msh3P13705 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Msh3P13705 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC17.95■□□□□ 0.46
Msh3P13705 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 AC158538.1-201ENSMUST00000225870 294 ntBASIC17.95■□□□□ 0.46
Msh3P13705 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Msh3P13705 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Msh3P13705 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Msh3P13705 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msh3P13705 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC17.94■□□□□ 0.46
Msh3P13705 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Gm19430-201ENSMUST00000193847 2137 ntBASIC17.94■□□□□ 0.46
Msh3P13705 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Msh3P13705 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Msh3P13705 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msh3P13705 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Msh3P13705 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms