Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC17.68■□□□□ 0.42
RaraP11416 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC17.68■□□□□ 0.42
RaraP11416 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
RaraP11416 Gm30025-201ENSMUST00000218555 728 ntBASIC17.68■□□□□ 0.42
RaraP11416 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RaraP11416 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RaraP11416 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RaraP11416 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RaraP11416 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
RaraP11416 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
RaraP11416 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RaraP11416 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RaraP11416 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RaraP11416 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Gm16011-201ENSMUST00000121567 2662 ntBASIC17.67■□□□□ 0.42
RaraP11416 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
RaraP11416 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
RaraP11416 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
RaraP11416 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC17.67■□□□□ 0.42
RaraP11416 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
RaraP11416 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RaraP11416 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC17.66■□□□□ 0.42
RaraP11416 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC17.66■□□□□ 0.42
RaraP11416 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
RaraP11416 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC17.66■□□□□ 0.42
RaraP11416 Gm13436-201ENSMUST00000120418 567 ntBASIC17.66■□□□□ 0.42
RaraP11416 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC17.66■□□□□ 0.42
RaraP11416 Gm2274-201ENSMUST00000184539 609 ntBASIC17.66■□□□□ 0.42
RaraP11416 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC17.66■□□□□ 0.42
RaraP11416 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
RaraP11416 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC17.66■□□□□ 0.42
RaraP11416 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
RaraP11416 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
RaraP11416 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RaraP11416 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
RaraP11416 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RaraP11416 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
RaraP11416 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
RaraP11416 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RaraP11416 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RaraP11416 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.65■□□□□ 0.42
RaraP11416 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RaraP11416 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
RaraP11416 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
RaraP11416 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
RaraP11416 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RaraP11416 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RaraP11416 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RaraP11416 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
RaraP11416 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RaraP11416 Ntrk2-205ENSMUST00000224402 2284 ntBASIC17.64■□□□□ 0.41
RaraP11416 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RaraP11416 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RaraP11416 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RaraP11416 Gm14464-201ENSMUST00000119658 1254 ntBASIC17.64■□□□□ 0.41
RaraP11416 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
RaraP11416 Gm16061-201ENSMUST00000122167 857 ntBASIC17.64■□□□□ 0.41
RaraP11416 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RaraP11416 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.64■□□□□ 0.41
RaraP11416 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RaraP11416 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC17.64■□□□□ 0.41
RaraP11416 Gm37055-201ENSMUST00000191866 133 ntBASIC17.64■□□□□ 0.41
RaraP11416 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RaraP11416 Gm7213-201ENSMUST00000215977 950 ntBASIC17.64■□□□□ 0.41
RaraP11416 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RaraP11416 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RaraP11416 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RaraP11416 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RaraP11416 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms