Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Chmp6P0C0A3 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
Chmp6P0C0A3 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Chmp6P0C0A3 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC17.79■□□□□ 0.44
Chmp6P0C0A3 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Chmp6P0C0A3 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC17.79■□□□□ 0.44
Chmp6P0C0A3 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Chmp6P0C0A3 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Gm37722-201ENSMUST00000193757 208 ntBASIC17.78■□□□□ 0.44
Chmp6P0C0A3 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chmp6P0C0A3 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Gm25016-201ENSMUST00000158399 131 ntBASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chmp6P0C0A3 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Chmp6P0C0A3 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Chmp6P0C0A3 Zkscan3-208ENSMUST00000224820 5398 ntBASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Gm9013-201ENSMUST00000132939 882 ntBASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chmp6P0C0A3 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Gm5587-201ENSMUST00000206270 674 ntBASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chmp6P0C0A3 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms