Protein–RNA interactions for Protein: P06804

Tnf, Tumor necrosis factor, mousemouse

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TnfP06804 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TnfP06804 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TnfP06804 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TnfP06804 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TnfP06804 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TnfP06804 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TnfP06804 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TnfP06804 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC17.29■□□□□ 0.36
TnfP06804 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TnfP06804 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC17.29■□□□□ 0.36
TnfP06804 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC17.29■□□□□ 0.36
TnfP06804 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TnfP06804 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
TnfP06804 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TnfP06804 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
TnfP06804 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Gm32996-201ENSMUST00000199828 1447 ntBASIC17.29■□□□□ 0.36
TnfP06804 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TnfP06804 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TnfP06804 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TnfP06804 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
TnfP06804 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
TnfP06804 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.28■□□□□ 0.36
TnfP06804 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC17.28■□□□□ 0.36
TnfP06804 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC17.28■□□□□ 0.36
TnfP06804 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
TnfP06804 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC17.28■□□□□ 0.36
TnfP06804 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.28■□□□□ 0.36
TnfP06804 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
TnfP06804 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TnfP06804 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TnfP06804 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
TnfP06804 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TnfP06804 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC17.27■□□□□ 0.36
TnfP06804 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TnfP06804 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.27■□□□□ 0.36
TnfP06804 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TnfP06804 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TnfP06804 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC17.27■□□□□ 0.36
TnfP06804 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TnfP06804 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TnfP06804 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TnfP06804 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC17.27■□□□□ 0.36
TnfP06804 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC17.27■□□□□ 0.36
TnfP06804 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
TnfP06804 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.27■□□□□ 0.36
TnfP06804 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TnfP06804 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TnfP06804 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.27■□□□□ 0.36
TnfP06804 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TnfP06804 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TnfP06804 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TnfP06804 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TnfP06804 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TnfP06804 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TnfP06804 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TnfP06804 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
TnfP06804 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
TnfP06804 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
TnfP06804 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.26■□□□□ 0.35
TnfP06804 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC17.26■□□□□ 0.35
TnfP06804 Gm7506-201ENSMUST00000207758 815 ntBASIC17.26■□□□□ 0.35
TnfP06804 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.26■□□□□ 0.35
TnfP06804 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
TnfP06804 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC17.26■□□□□ 0.35
TnfP06804 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
TnfP06804 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 AC132265.1-201ENSMUST00000219233 1665 ntBASIC17.26■□□□□ 0.35
TnfP06804 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TnfP06804 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TnfP06804 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TnfP06804 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TnfP06804 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms