Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lmx1bO88609 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lmx1bO88609 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lmx1bO88609 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lmx1bO88609 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lmx1bO88609 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Lmx1bO88609 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Lmx1bO88609 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lmx1bO88609 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lmx1bO88609 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Lmx1bO88609 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lmx1bO88609 Gm34391-201ENSMUST00000203706 907 ntBASIC14.77□□□□□ -0.05
Lmx1bO88609 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lmx1bO88609 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lmx1bO88609 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lmx1bO88609 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Lmx1bO88609 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lmx1bO88609 Gm8839-201ENSMUST00000121279 1645 ntBASIC14.77□□□□□ -0.05
Lmx1bO88609 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lmx1bO88609 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lmx1bO88609 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lmx1bO88609 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Lmx1bO88609 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Lmx1bO88609 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC14.76□□□□□ -0.05
Lmx1bO88609 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Lmx1bO88609 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC14.76□□□□□ -0.05
Lmx1bO88609 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC14.76□□□□□ -0.05
Lmx1bO88609 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Lmx1bO88609 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lmx1bO88609 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC14.76□□□□□ -0.05
Lmx1bO88609 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Lmx1bO88609 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC14.75□□□□□ -0.05
Lmx1bO88609 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Lmx1bO88609 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Gm12895-201ENSMUST00000122214 226 ntBASIC14.75□□□□□ -0.05
Lmx1bO88609 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC14.75□□□□□ -0.05
Lmx1bO88609 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Lmx1bO88609 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lmx1bO88609 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lmx1bO88609 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lmx1bO88609 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Lmx1bO88609 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lmx1bO88609 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Lmx1bO88609 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Lmx1bO88609 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Lmx1bO88609 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lmx1bO88609 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lmx1bO88609 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lmx1bO88609 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
Lmx1bO88609 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Lmx1bO88609 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC14.74□□□□□ -0.05
Lmx1bO88609 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC14.74□□□□□ -0.05
Lmx1bO88609 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC14.74□□□□□ -0.05
Lmx1bO88609 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
Lmx1bO88609 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC14.74□□□□□ -0.05
Lmx1bO88609 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.74□□□□□ -0.05
Lmx1bO88609 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC14.74□□□□□ -0.05
Lmx1bO88609 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Lmx1bO88609 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Lmx1bO88609 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lmx1bO88609 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lmx1bO88609 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms