Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC13.59□□□□□ -0.23
Hmgb3O54879 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC13.59□□□□□ -0.23
Hmgb3O54879 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
Hmgb3O54879 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
Hmgb3O54879 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Hmgb3O54879 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC13.59□□□□□ -0.23
Hmgb3O54879 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC13.59□□□□□ -0.23
Hmgb3O54879 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
Hmgb3O54879 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
Hmgb3O54879 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC13.58□□□□□ -0.23
Hmgb3O54879 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC13.58□□□□□ -0.23
Hmgb3O54879 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC13.58□□□□□ -0.23
Hmgb3O54879 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Hmgb3O54879 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Hmgb3O54879 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.23
Hmgb3O54879 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Hmgb3O54879 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Hmgb3O54879 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb3O54879 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
Hmgb3O54879 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb3O54879 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Hmgb3O54879 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
Hmgb3O54879 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC13.58□□□□□ -0.24
Hmgb3O54879 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC13.58□□□□□ -0.24
Hmgb3O54879 Gm18671-201ENSMUST00000214826 683 ntBASIC13.58□□□□□ -0.24
Hmgb3O54879 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb3O54879 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Hmgb3O54879 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb3O54879 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Hmgb3O54879 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb3O54879 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb3O54879 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb3O54879 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Hmgb3O54879 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC13.58□□□□□ -0.24
Hmgb3O54879 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb3O54879 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb3O54879 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb3O54879 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb3O54879 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb3O54879 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
Hmgb3O54879 Gm16011-201ENSMUST00000121567 2662 ntBASIC13.57□□□□□ -0.24
Hmgb3O54879 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Hmgb3O54879 Gm44549-201ENSMUST00000208351 577 ntBASIC13.57□□□□□ -0.24
Hmgb3O54879 Gm10033-202ENSMUST00000211874 928 ntBASIC13.57□□□□□ -0.24
Hmgb3O54879 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Hmgb3O54879 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Gm45605-201ENSMUST00000210265 4269 ntBASIC13.57□□□□□ -0.24
Hmgb3O54879 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Hmgb3O54879 Gm29340-201ENSMUST00000188763 3854 ntBASIC13.57□□□□□ -0.24
Hmgb3O54879 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb3O54879 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC13.56□□□□□ -0.24
Hmgb3O54879 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Hmgb3O54879 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Hmgb3O54879 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC13.56□□□□□ -0.24
Hmgb3O54879 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms