Protein–RNA interactions for Protein: B1AVK5

Col4a6, Collagen, type IV, alpha 6, mousemouse

Predictions only

Length 1,691 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a6B1AVK5 Gm11025-201ENSMUST00000140773 466 ntBASIC16.73■□□□□ 0.27
Col4a6B1AVK5 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col4a6B1AVK5 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col4a6B1AVK5 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col4a6B1AVK5 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
Col4a6B1AVK5 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col4a6B1AVK5 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col4a6B1AVK5 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col4a6B1AVK5 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col4a6B1AVK5 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col4a6B1AVK5 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col4a6B1AVK5 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Best4-ps-201ENSMUST00000129783 1380 ntBASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col4a6B1AVK5 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col4a6B1AVK5 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Col4a6B1AVK5 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Col4a6B1AVK5 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Col4a6B1AVK5 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Col4a6B1AVK5 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col4a6B1AVK5 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col4a6B1AVK5 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Col4a6B1AVK5 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col4a6B1AVK5 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col4a6B1AVK5 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC16.7■□□□□ 0.26
Col4a6B1AVK5 Gm44492-201ENSMUST00000197012 141 ntBASIC16.7■□□□□ 0.26
Col4a6B1AVK5 AC158982.1-201ENSMUST00000228377 901 ntBASIC16.7■□□□□ 0.26
Col4a6B1AVK5 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col4a6B1AVK5 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col4a6B1AVK5 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col4a6B1AVK5 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col4a6B1AVK5 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col4a6B1AVK5 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col4a6B1AVK5 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col4a6B1AVK5 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Gm14701-201ENSMUST00000117156 348 ntBASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Gm38318-201ENSMUST00000195769 1706 ntBASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col4a6B1AVK5 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms