Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL590399.6-201ENST00000446396 307 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 AL136380.1-201ENST00000447970 162 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 HMGB1P29-201ENST00000505659 499 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 SETP7-201ENST00000552169 453 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 AC124947.2-202ENST00000552735 133 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 AC068790.3-201ENST00000602988 553 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 AC010680.4-201ENST00000605334 543 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 CR381653.2-201ENST00000624041 768 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 OR52H1-202ENST00000641796 1061 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 AL133412.1-201ENST00000380194 2992 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 RNA5SP130-201ENST00000364431 114 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 RNU6-356P-201ENST00000384140 107 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 RPL23AP32-201ENST00000395315 459 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 RPS3AP36-201ENST00000398190 775 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 HLFP1-201ENST00000402375 499 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC245052.5-201ENST00000416320 649 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC127526.1-201ENST00000417526 366 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 MTCYBP24-201ENST00000420387 1106 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC006548.1-201ENST00000427470 102 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 UBE2V1P8-201ENST00000437166 265 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC104308.1-201ENST00000454621 333 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AL359385.1-201ENST00000456509 365 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 RN7SL93P-201ENST00000463035 293 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC006463.2-201ENST00000473326 348 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC114967.1-201ENST00000504890 259 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AP003497.1-201ENST00000528472 562 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AP003181.2-201ENST00000528941 181 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AP000907.2-201ENST00000530827 353 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AL356432.3-201ENST00000568952 465 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 MIR4284-201ENST00000578924 81 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC011451.2-201ENST00000604303 598 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC090517.2-201ENST00000614966 680 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 AC040168.1-201ENST00000623594 991 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 CR381572.1-201ENST00000625098 102 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 MIR7641-1-201ENST00000627518 61 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 FAM35DP-201ENST00000323387 2712 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 MAPK10-373ENST00000641983 6772 ntBASIC4.6□□□□□ -1.67
LIMCH1Q9UPQ0 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 MRPS10P2-201ENST00000431226 381 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 RPS6P12-201ENST00000432491 726 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 MTCO3P20-201ENST00000454926 688 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 RBM43P1-201ENST00000476891 1081 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 TMEM248P1-201ENST00000510579 951 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 MTCYBP41-201ENST00000528913 1123 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AC123904.2-201ENST00000548059 300 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AC060771.1-201ENST00000582031 164 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AL669831.4-202ENST00000590817 238 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AL606834.2-201ENST00000602954 668 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AC112230.1-201ENST00000604342 547 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AL161734.1-201ENST00000609720 557 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 WT1-AS_8.1-201ENST00000615200 275 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AC002550.2-201ENST00000621246 394 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 AC068880.5-201ENST00000624331 290 ntBASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC4.59□□□□□ -1.67
LIMCH1Q9UPQ0 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms