Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 OR4K7P-201ENST00000580232 945 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AC022069.1-201ENST00000582910 658 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.54□□□□□ -1.84
USP28Q96RU2 SNORD39.3-201ENST00000584451 71 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AC010620.1-201ENST00000601088 1102 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AL020997.2-201ENST00000602607 184 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.54□□□□□ -1.84
USP28Q96RU2 Z99497.2-201ENST00000603634 310 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AL590282.1-201ENST00000610379 1136 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AL392048.1-201ENST00000613946 534 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AC098679.5-201ENST00000624394 571 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
USP28Q96RU2 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP28Q96RU2 MTCO1P12-201ENST00000414273 1543 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP28Q96RU2 AL672296.1-201ENST00000427780 2158 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 AC107982.1-201ENST00000507171 1300 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 AL391994.1-201ENST00000254724 282 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 AC073325.2-201ENST00000339545 159 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 RNU6-621P-201ENST00000364752 109 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP28Q96RU2 SNORA7.4-201ENST00000384249 137 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 SNORD67-201ENST00000390833 111 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 MIR1302-8-201ENST00000408342 128 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 TOMM22P1-201ENST00000418578 312 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 AC098592.1-201ENST00000419352 333 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.53□□□□□ -1.84
USP28Q96RU2 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.53□□□□□ -1.84
USP28Q96RU2 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.53□□□□□ -1.84
USP28Q96RU2 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.53□□□□□ -1.84
USP28Q96RU2 YWHAZP7-201ENST00000436906 631 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 AL354941.1-201ENST00000438600 464 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.53□□□□□ -1.84
USP28Q96RU2 MTCYBP3-201ENST00000445588 1137 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 AL034418.1-201ENST00000448675 860 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.53□□□□□ -1.84
USP28Q96RU2 AC092754.2-201ENST00000463506 460 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 RPS27AP1-201ENST00000475545 471 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.53□□□□□ -1.84
USP28Q96RU2 AC110794.1-201ENST00000505816 425 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 MTCO2P32-201ENST00000514865 403 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 AC105185.1-201ENST00000518705 535 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC3.53□□□□□ -1.84
USP28Q96RU2 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.53□□□□□ -1.84
USP28Q96RU2 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.53□□□□□ -1.84
USP28Q96RU2 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.53□□□□□ -1.84
USP28Q96RU2 AP005136.1-201ENST00000579765 429 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 UBL5P2-201ENST00000583788 219 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 MIR4999-201ENST00000585029 91 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.53□□□□□ -1.84
USP28Q96RU2 AC006539.2-201ENST00000601729 572 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 AL390838.2-201ENST00000602394 274 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.53□□□□□ -1.84
USP28Q96RU2 AC091946.2-201ENST00000606105 291 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.53□□□□□ -1.84
USP28Q96RU2 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
USP28Q96RU2 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.53□□□□□ -1.84
USP28Q96RU2 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 AC138932.5-201ENST00000617759 563 ntBASIC3.53□□□□□ -1.84
USP28Q96RU2 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.53□□□□□ -1.84
USP28Q96RU2 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.53□□□□□ -1.84
USP28Q96RU2 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.53□□□□□ -1.84
USP28Q96RU2 AC021755.1-201ENST00000559747 1447 ntBASIC3.53□□□□□ -1.85
USP28Q96RU2 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP28Q96RU2 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
USP28Q96RU2 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP28Q96RU2 Y_RNA.311-201ENST00000365068 96 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 TMSB4XP8-201ENST00000402089 135 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 SSXP10-201ENST00000402595 565 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 TMSB4XP6-201ENST00000415187 135 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.52□□□□□ -1.85
USP28Q96RU2 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.52□□□□□ -1.85
USP28Q96RU2 TMSB4XP1-201ENST00000424567 135 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 HMGN2P20-201ENST00000437531 273 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.52□□□□□ -1.85
USP28Q96RU2 AL591503.2-201ENST00000442314 1005 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.52□□□□□ -1.85
USP28Q96RU2 SNORA84-201ENST00000459229 133 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 RN7SL863P-201ENST00000462370 296 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.52□□□□□ -1.85
USP28Q96RU2 OR4G11P-201ENST00000492842 939 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP28Q96RU2 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.52□□□□□ -1.85
USP28Q96RU2 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC3.52□□□□□ -1.85
USP28Q96RU2 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.52□□□□□ -1.85
USP28Q96RU2 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.52□□□□□ -1.85
USP28Q96RU2 RNA5SP380-201ENST00000517190 98 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 RNU6-1261P-201ENST00000517194 104 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.52□□□□□ -1.85
USP28Q96RU2 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC3.52□□□□□ -1.85
USP28Q96RU2 MTCYBP27-201ENST00000555160 670 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.52□□□□□ -1.85
USP28Q96RU2 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.52□□□□□ -1.85
USP28Q96RU2 AC109446.2-201ENST00000567872 497 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 AC012182.1-201ENST00000570133 895 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 AC110760.3-201ENST00000598794 467 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 VN1R82P-201ENST00000601481 356 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 AL022161.1-201ENST00000604390 213 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms