Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 OR4G11P-201ENST00000492842 939 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 UBE2V1P12-201ENST00000503954 474 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 RNA5SP380-201ENST00000517190 98 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 AC245166.1-201ENST00000521012 253 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VPS39Q96JC1 LRRC6P1-201ENST00000532188 885 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 AC007458.1-201ENST00000542812 373 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 MTCYBP23-201ENST00000558717 1102 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 VN1R83P-201ENST00000595685 445 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 MTND3P19-201ENST00000603825 345 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 AC010975.3-201ENST00000618727 978 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 AC011330.2-201ENST00000621680 635 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 MKKS-204ENST00000639674 192 ntBASIC3.21□□□□□ -1.9
VPS39Q96JC1 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
VPS39Q96JC1 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS39Q96JC1 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 U3.6-201ENST00000363622 211 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 SNORA40.2-201ENST00000390847 128 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 AL356131.1-201ENST00000405826 414 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 HMGN1P24-201ENST00000412282 298 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 AL161449.1-201ENST00000414531 1199 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 HMGN2P30-201ENST00000423237 256 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VPS39Q96JC1 MTCO1P3-201ENST00000429327 192 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 AC010099.1-201ENST00000455434 375 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 AP001992.1-205ENST00000462248 379 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 AL049714.1-201ENST00000466686 347 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 RN7SL601P-201ENST00000471221 293 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 AC021678.1-201ENST00000505195 936 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 RNU6-56P-201ENST00000516986 93 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 AC125611.1-201ENST00000549563 229 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 AC011611.1-201ENST00000552179 197 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 AC138915.2-201ENST00000569776 97 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 AC105224.1-201ENST00000587055 421 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 AL133507.1-201ENST00000605269 557 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 AC016597.2-201ENST00000613256 341 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 AL121895.2-201ENST00000619558 447 ntBASIC3.2□□□□□ -1.9
VPS39Q96JC1 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS39Q96JC1 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.19□□□□□ -1.9
VPS39Q96JC1 TPTE2P4-201ENST00000258589 1605 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC099654.7-201ENST00000635788 2127 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 AL049781.1-201ENST00000623195 3585 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
VPS39Q96JC1 RNU4-51P-201ENST00000364206 140 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 DYNLT3P1-201ENST00000378574 347 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 MIR490-201ENST00000384865 128 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 RNU6-1242P-201ENST00000391052 103 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 SNRPEP2-201ENST00000397592 279 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 RNU4-22P-201ENST00000411058 166 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 AL645937.1-202ENST00000421799 937 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 RPL7P44-201ENST00000424827 742 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 SAR1AP4-201ENST00000429225 591 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC104332.2-201ENST00000429959 156 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC092573.2-201ENST00000434546 243 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC005019.1-201ENST00000436455 431 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 VN1R34P-201ENST00000447387 883 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 OFD1P3Y-201ENST00000453312 783 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC026410.2-201ENST00000460281 156 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 RPL21P129-201ENST00000491732 478 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 RNU6-415P-201ENST00000516252 97 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC104986.1-201ENST00000517978 436 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 CASP1P1-201ENST00000526345 212 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 145.8 ms