Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC110792.3-201ENST00000595906 1614 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
COL5A3P25940 NDUFA5P4-201ENST00000436704 385 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 RAD1P2-201ENST00000446414 663 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 AC069277.2-201ENST00000454211 432 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 RPL23AP63-201ENST00000498752 471 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 GZMAP1-201ENST00000503054 631 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
COL5A3P25940 SNX5P1-201ENST00000505757 1041 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 TTC39CP1-201ENST00000512513 755 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.42□□□□□ -2.02
COL5A3P25940 DNAJC19P9-201ENST00000555084 351 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC2.42□□□□□ -2.02
COL5A3P25940 ABI1P1-201ENST00000603375 1120 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL5A3P25940 MIR378A-201ENST00000362177 66 ntBASIC2.41□□□□□ -2.02
COL5A3P25940 RNU4-23P-201ENST00000362839 140 ntBASIC2.41□□□□□ -2.02
COL5A3P25940 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.41□□□□□ -2.02
COL5A3P25940 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.41□□□□□ -2.02
COL5A3P25940 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC2.41□□□□□ -2.02
COL5A3P25940 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.41□□□□□ -2.02
COL5A3P25940 BUD31P2-201ENST00000449374 300 ntBASIC2.41□□□□□ -2.02
COL5A3P25940 AC092754.2-201ENST00000463506 460 ntBASIC2.41□□□□□ -2.02
COL5A3P25940 AC104435.1-201ENST00000483483 166 ntBASIC2.41□□□□□ -2.02
COL5A3P25940 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.41□□□□□ -2.02
COL5A3P25940 AC025881.1-201ENST00000518851 512 ntBASIC2.41□□□□□ -2.02
COL5A3P25940 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.41□□□□□ -2.02
COL5A3P25940 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.41□□□□□ -2.02
COL5A3P25940 AC018754.1-201ENST00000607486 925 ntBASIC2.41□□□□□ -2.02
COL5A3P25940 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC2.41□□□□□ -2.02
COL5A3P25940 AC107308.1-201ENST00000615897 301 ntBASIC2.41□□□□□ -2.02
COL5A3P25940 AC145207.9-201ENST00000623802 325 ntBASIC2.41□□□□□ -2.02
COL5A3P25940 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.41□□□□□ -2.02
COL5A3P25940 AC131280.1-202ENST00000624067 4211 ntBASIC2.41□□□□□ -2.02
COL5A3P25940 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
COL5A3P25940 RNY1P10-201ENST00000363268 113 ntBASIC2.4□□□□□ -2.02
COL5A3P25940 RNU6-225P-201ENST00000384613 103 ntBASIC2.4□□□□□ -2.02
COL5A3P25940 NEK4P1-201ENST00000433383 879 ntBASIC2.4□□□□□ -2.02
COL5A3P25940 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC2.4□□□□□ -2.02
COL5A3P25940 HMGB3P21-201ENST00000452483 547 ntBASIC2.4□□□□□ -2.02
COL5A3P25940 HMGN1P8-201ENST00000463578 288 ntBASIC2.4□□□□□ -2.02
COL5A3P25940 AC021087.2-201ENST00000504656 1203 ntBASIC2.4□□□□□ -2.02
COL5A3P25940 NAMPTP2-201ENST00000505629 1115 ntBASIC2.4□□□□□ -2.02
COL5A3P25940 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC2.4□□□□□ -2.02
COL5A3P25940 RNA5SP402-201ENST00000517148 110 ntBASIC2.4□□□□□ -2.02
COL5A3P25940 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC2.4□□□□□ -2.02
COL5A3P25940 AC008083.2-201ENST00000546707 476 ntBASIC2.4□□□□□ -2.02
COL5A3P25940 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.4□□□□□ -2.02
COL5A3P25940 AC067805.1-201ENST00000559344 470 ntBASIC2.4□□□□□ -2.02
COL5A3P25940 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.4□□□□□ -2.02
COL5A3P25940 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.4□□□□□ -2.02
COL5A3P25940 AC084373.1-201ENST00000603311 235 ntBASIC2.4□□□□□ -2.02
COL5A3P25940 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC2.4□□□□□ -2.02
COL5A3P25940 AC016877.3-201ENST00000606778 504 ntBASIC2.4□□□□□ -2.02
COL5A3P25940 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.4□□□□□ -2.02
COL5A3P25940 CFTRP2-201ENST00000634304 199 ntBASIC2.4□□□□□ -2.02
COL5A3P25940 RNU6-661P-201ENST00000362409 107 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.39□□□□□ -2.03
COL5A3P25940 RPL34P26-201ENST00000445636 354 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC2.39□□□□□ -2.03
COL5A3P25940 RPL23AP7-203ENST00000449021 469 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 MTND3P6-201ENST00000485242 339 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.39□□□□□ -2.03
COL5A3P25940 MTCO1P30-201ENST00000515244 580 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 RNA5SP182-201ENST00000516064 82 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 snoZ278.1-201ENST00000517059 112 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC2.39□□□□□ -2.03
COL5A3P25940 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.39□□□□□ -2.03
COL5A3P25940 MAGOH2P-202ENST00000584384 429 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.39□□□□□ -2.03
COL5A3P25940 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.39□□□□□ -2.03
COL5A3P25940 AC010200.2-201ENST00000605098 235 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 MFSD8-245ENST00000641743 948 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.39□□□□□ -2.03
COL5A3P25940 U3.15-201ENST00000365398 212 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AC083799.1-201ENST00000366451 910 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.39□□□□□ -2.03
COL5A3P25940 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 MTCYBP7-201ENST00000419540 1134 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 MTCYBP29-201ENST00000436327 1006 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC2.39□□□□□ -2.03
COL5A3P25940 ELOCP13-201ENST00000443934 329 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AC009237.8-201ENST00000445492 379 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.39□□□□□ -2.03
COL5A3P25940 LARP7P4-201ENST00000481075 878 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC2.39□□□□□ -2.03
COL5A3P25940 AP004242.1-201ENST00000533701 349 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AC034268.2-201ENST00000571784 482 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AC006270.2-201ENST00000578523 652 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 FAM60CP-201ENST00000591086 664 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AC016911.1-201ENST00000613297 452 ntBASIC2.39□□□□□ -2.03
COL5A3P25940 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.39□□□□□ -2.03
COL5A3P25940 AC004520.1-201ENST00000608362 1413 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 AL118496.1-201ENST00000440201 1812 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
COL5A3P25940 RNU6-819P-201ENST00000364116 107 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 RNU6-1251P-201ENST00000364502 107 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
COL5A3P25940 MTND3P20-201ENST00000407663 186 ntBASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms