Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3□□□□□ -1.93
CCDC88BA6NC98 SNRPFP2-201ENST00000440710 251 ntBASIC3□□□□□ -1.93
CCDC88BA6NC98 AL353093.1-201ENST00000441292 436 ntBASIC3□□□□□ -1.93
CCDC88BA6NC98 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC3□□□□□ -1.93
CCDC88BA6NC98 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3□□□□□ -1.93
CCDC88BA6NC98 RPL23AP78-201ENST00000599928 470 ntBASIC3□□□□□ -1.93
CCDC88BA6NC98 AL645939.4-201ENST00000604495 135 ntBASIC3□□□□□ -1.93
CCDC88BA6NC98 AC011890.2-201ENST00000613393 294 ntBASIC3□□□□□ -1.93
CCDC88BA6NC98 METTL21EP-201ENST00000298105 713 ntBASIC2.99□□□□□ -1.93
CCDC88BA6NC98 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC88BA6NC98 AC009414.1-201ENST00000427200 443 ntBASIC2.99□□□□□ -1.93
CCDC88BA6NC98 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC88BA6NC98 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC88BA6NC98 HMGB1P12-201ENST00000438594 598 ntBASIC2.99□□□□□ -1.93
CCDC88BA6NC98 MTCYBP17-201ENST00000503579 789 ntBASIC2.99□□□□□ -1.93
CCDC88BA6NC98 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC88BA6NC98 SNORA31.11-201ENST00000516528 139 ntBASIC2.99□□□□□ -1.93
CCDC88BA6NC98 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC88BA6NC98 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC88BA6NC98 AC010546.1-201ENST00000569391 485 ntBASIC2.99□□□□□ -1.93
CCDC88BA6NC98 AC024560.3-201ENST00000608482 349 ntBASIC2.99□□□□□ -1.93
CCDC88BA6NC98 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC88BA6NC98 API5P2-201ENST00000397055 1498 ntBASIC2.99□□□□□ -1.93
CCDC88BA6NC98 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC88BA6NC98 UBE2L2-201ENST00000254302 429 ntBASIC2.98□□□□□ -1.93
CCDC88BA6NC98 Y_RNA.466-201ENST00000384294 113 ntBASIC2.98□□□□□ -1.93
CCDC88BA6NC98 MIR499A-201ENST00000384903 122 ntBASIC2.98□□□□□ -1.93
CCDC88BA6NC98 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC88BA6NC98 RPL23AP58-201ENST00000440453 469 ntBASIC2.98□□□□□ -1.93
CCDC88BA6NC98 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC88BA6NC98 Z73417.1-201ENST00000447373 778 ntBASIC2.98□□□□□ -1.93
CCDC88BA6NC98 AC022431.1-201ENST00000450941 438 ntBASIC2.98□□□□□ -1.93
CCDC88BA6NC98 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC88BA6NC98 OR4P1P-201ENST00000530808 1136 ntBASIC2.98□□□□□ -1.93
CCDC88BA6NC98 AC010872.1-201ENST00000624225 675 ntBASIC2.98□□□□□ -1.93
CCDC88BA6NC98 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC88BA6NC98 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC88BA6NC98 AC007256.1-201ENST00000392253 2765 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.97□□□□□ -1.93
CCDC88BA6NC98 AL139276.1-201ENST00000311910 1001 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 RNA5SP27-201ENST00000363839 119 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 SNORA16.1-201ENST00000364597 132 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 RNA5SP138-201ENST00000365098 114 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC88BA6NC98 Z98749.2-208ENST00000381646 500 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 HMGB1P13-201ENST00000406019 642 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 AC092832.1-201ENST00000422934 400 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 UBE2V2P1-201ENST00000434717 398 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 AL138799.3-201ENST00000438968 350 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC88BA6NC98 RPL7P31-201ENST00000450192 724 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC88BA6NC98 SNRPGP3-201ENST00000469405 227 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 RN7SKP96-201ENST00000516948 297 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 ZKSCAN7P1-201ENST00000543668 673 ntBASIC2.97□□□□□ -1.93
CCDC88BA6NC98 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.97□□□□□ -1.93
CCDC88BA6NC98 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC88BA6NC98 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC88BA6NC98 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.97□□□□□ -1.93
CCDC88BA6NC98 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.97□□□□□ -1.93
CCDC88BA6NC98 USP9YP27-201ENST00000418455 438 ntBASIC2.96□□□□□ -1.93
CCDC88BA6NC98 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC2.96□□□□□ -1.93
CCDC88BA6NC98 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.96□□□□□ -1.93
CCDC88BA6NC98 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.96□□□□□ -1.93
CCDC88BA6NC98 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC88BA6NC98 RNA5SP37-201ENST00000365420 130 ntBASIC2.96□□□□□ -1.94
CCDC88BA6NC98 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC88BA6NC98 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.96□□□□□ -1.94
CCDC88BA6NC98 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC88BA6NC98 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.96□□□□□ -1.94
CCDC88BA6NC98 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC88BA6NC98 AC073901.1-201ENST00000462471 408 ntBASIC2.96□□□□□ -1.94
CCDC88BA6NC98 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC88BA6NC98 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC88BA6NC98 HPVC1-201ENST00000629899 1198 ntBASIC2.96□□□□□ -1.94
CCDC88BA6NC98 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC88BA6NC98 HMGB1P27-201ENST00000431429 603 ntBASIC2.95□□□□□ -1.94
CCDC88BA6NC98 PTGES3P5-201ENST00000455109 434 ntBASIC2.95□□□□□ -1.94
CCDC88BA6NC98 RPS26P21-201ENST00000475397 348 ntBASIC2.95□□□□□ -1.94
CCDC88BA6NC98 AL163540.1-201ENST00000485382 386 ntBASIC2.95□□□□□ -1.94
CCDC88BA6NC98 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC88BA6NC98 ARL4AP2-201ENST00000507378 601 ntBASIC2.95□□□□□ -1.94
CCDC88BA6NC98 TRMT112P2-201ENST00000512910 132 ntBASIC2.95□□□□□ -1.94
CCDC88BA6NC98 OR8X1P-201ENST00000534542 869 ntBASIC2.95□□□□□ -1.94
CCDC88BA6NC98 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.95□□□□□ -1.94
CCDC88BA6NC98 AC013444.2-201ENST00000603317 787 ntBASIC2.95□□□□□ -1.94
CCDC88BA6NC98 MIR502-201ENST00000606349 86 ntBASIC2.95□□□□□ -1.94
CCDC88BA6NC98 AC016877.3-201ENST00000606778 504 ntBASIC2.95□□□□□ -1.94
CCDC88BA6NC98 AL121594.5-201ENST00000631724 573 ntBASIC2.95□□□□□ -1.94
CCDC88BA6NC98 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
CCDC88BA6NC98 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.94□□□□□ -1.94
CCDC88BA6NC98 RPL19P1-201ENST00000411635 428 ntBASIC2.94□□□□□ -1.94
CCDC88BA6NC98 AP000275.1-201ENST00000411943 390 ntBASIC2.94□□□□□ -1.94
CCDC88BA6NC98 USP9YP10-201ENST00000454868 628 ntBASIC2.94□□□□□ -1.94
CCDC88BA6NC98 TVP23BP2-201ENST00000455082 615 ntBASIC2.94□□□□□ -1.94
CCDC88BA6NC98 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC88BA6NC98 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC88BA6NC98 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC88BA6NC98 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.94□□□□□ -1.94
CCDC88BA6NC98 uc_338.5-201ENST00000611839 155 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms