Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.56□□□□□ -1.84
USP28Q96RU2 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
USP28Q96RU2 AC103881.1-201ENST00000603476 538 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 AC072039.2-201ENST00000608883 439 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.56□□□□□ -1.84
USP28Q96RU2 AL607023.1-201ENST00000620045 248 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 AC026422.1-201ENST00000623961 452 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 U6.105-201ENST00000637379 88 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 MKKS-204ENST00000639674 192 ntBASIC3.56□□□□□ -1.84
USP28Q96RU2 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
USP28Q96RU2 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
USP28Q96RU2 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.56□□□□□ -1.84
USP28Q96RU2 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP28Q96RU2 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.55□□□□□ -1.84
USP28Q96RU2 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 MTND4P34-201ENST00000572715 1371 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
USP28Q96RU2 AL355596.1-201ENST00000565399 3996 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.55□□□□□ -1.84
USP28Q96RU2 RPL23AP57-201ENST00000332361 466 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 RNU6-492P-201ENST00000363035 104 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 SNORA62.3-201ENST00000365110 153 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 MIR200C-201ENST00000384980 68 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 RNU6-837P-201ENST00000391056 108 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP28Q96RU2 AC008280.1-201ENST00000418851 412 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.55□□□□□ -1.84
USP28Q96RU2 AL365338.1-201ENST00000422282 858 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.55□□□□□ -1.84
USP28Q96RU2 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3.55□□□□□ -1.84
USP28Q96RU2 RPL31P54-201ENST00000429803 370 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 AL050321.1-201ENST00000432363 400 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.55□□□□□ -1.84
USP28Q96RU2 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.55□□□□□ -1.84
USP28Q96RU2 MTCO2P25-201ENST00000447065 681 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.55□□□□□ -1.84
USP28Q96RU2 RPL7P52-201ENST00000449200 742 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 AL109741.2-201ENST00000455561 343 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.55□□□□□ -1.84
USP28Q96RU2 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.55□□□□□ -1.84
USP28Q96RU2 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP28Q96RU2 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.55□□□□□ -1.84
USP28Q96RU2 Y_RNA.688-201ENST00000516565 95 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.55□□□□□ -1.84
USP28Q96RU2 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
USP28Q96RU2 AP001189.2-201ENST00000527320 189 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 AP000790.1-201ENST00000528891 737 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.55□□□□□ -1.84
USP28Q96RU2 AC090888.1-201ENST00000561335 1141 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 AC107954.1-201ENST00000565906 727 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.55□□□□□ -1.84
USP28Q96RU2 Z94722.1-201ENST00000604328 474 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 AC106791.2-201ENST00000604680 391 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.55□□□□□ -1.84
USP28Q96RU2 AC006133.1-201ENST00000617106 264 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.55□□□□□ -1.84
USP28Q96RU2 SNORA50A-202ENST00000629536 136 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.55□□□□□ -1.84
USP28Q96RU2 MIR3974-201ENST00000637126 96 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 AC007671.2-201ENST00000637344 619 ntBASIC3.55□□□□□ -1.84
USP28Q96RU2 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP28Q96RU2 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP28Q96RU2 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
USP28Q96RU2 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
USP28Q96RU2 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP28Q96RU2 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP28Q96RU2 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
USP28Q96RU2 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP28Q96RU2 OR1S2-201ENST00000302592 978 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
USP28Q96RU2 RNU6-115P-201ENST00000364310 107 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.54□□□□□ -1.84
USP28Q96RU2 RNU6-1200P-201ENST00000384162 107 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
USP28Q96RU2 TAF9BP1-201ENST00000396646 746 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AL590084.2-201ENST00000401481 382 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.54□□□□□ -1.84
USP28Q96RU2 AL356967.1-201ENST00000406305 431 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AL450338.1-201ENST00000407987 512 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 RPS7P15-201ENST00000415804 584 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AC069157.1-201ENST00000421749 137 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 MTCO3P1-205ENST00000422088 832 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AC233981.1-201ENST00000423224 461 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AC005345.1-201ENST00000431868 217 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 RPS25P9-201ENST00000435591 252 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AL606662.1-201ENST00000445763 553 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 ZNF736P5Y-201ENST00000451173 805 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 MTND1P16-201ENST00000465177 898 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.54□□□□□ -1.84
USP28Q96RU2 AC147055.4-201ENST00000504399 745 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AC109445.1-201ENST00000512356 383 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.54□□□□□ -1.84
USP28Q96RU2 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.54□□□□□ -1.84
USP28Q96RU2 AC109635.4-202ENST00000531666 412 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.54□□□□□ -1.84
USP28Q96RU2 AL356057.1-201ENST00000533798 831 ntBASIC3.54□□□□□ -1.84
USP28Q96RU2 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.54□□□□□ -1.84
USP28Q96RU2 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.54□□□□□ -1.84
USP28Q96RU2 AC093519.1-201ENST00000566109 298 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms