Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC008526.1-201ENST00000509149 338 ntBASIC1.38□□□□□ -2.19
COL7A1Q02388 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC1.38□□□□□ -2.19
COL7A1Q02388 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC1.38□□□□□ -2.19
COL7A1Q02388 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC1.38□□□□□ -2.19
COL7A1Q02388 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.38□□□□□ -2.19
COL7A1Q02388 AC016590.3-201ENST00000611171 753 ntBASIC1.38□□□□□ -2.19
COL7A1Q02388 AC074140.1-201ENST00000621617 208 ntBASIC1.38□□□□□ -2.19
COL7A1Q02388 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC1.38□□□□□ -2.19
COL7A1Q02388 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC1.38□□□□□ -2.19
COL7A1Q02388 RPL23AP55-201ENST00000498163 452 ntBASIC1.38□□□□□ -2.19
COL7A1Q02388 IGKV2D-36-201ENST00000518643 226 ntBASIC1.38□□□□□ -2.19
COL7A1Q02388 PDCD5P1-201ENST00000543528 309 ntBASIC1.38□□□□□ -2.19
COL7A1Q02388 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.38□□□□□ -2.19
COL7A1Q02388 AC120053.1-201ENST00000607706 736 ntBASIC1.38□□□□□ -2.19
COL7A1Q02388 AC024560.3-201ENST00000608482 349 ntBASIC1.38□□□□□ -2.19
COL7A1Q02388 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC1.38□□□□□ -2.19
COL7A1Q02388 AC010680.1-201ENST00000590024 3590 ntBASIC1.38□□□□□ -2.19
COL7A1Q02388 AL606537.1-201ENST00000607258 2011 ntBASIC1.38□□□□□ -2.19
COL7A1Q02388 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC1.37□□□□□ -2.19
COL7A1Q02388 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC1.37□□□□□ -2.19
COL7A1Q02388 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC1.37□□□□□ -2.19
COL7A1Q02388 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC1.37□□□□□ -2.19
COL7A1Q02388 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
COL7A1Q02388 RNA5SP37-201ENST00000365420 130 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 AC019155.1-201ENST00000382242 574 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 MIR598-201ENST00000384868 97 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC1.37□□□□□ -2.19
COL7A1Q02388 HMGB1P27-201ENST00000431429 603 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC1.37□□□□□ -2.19
COL7A1Q02388 MTCYBP31-201ENST00000438855 1122 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 RPL36AP33-201ENST00000450395 310 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 MIR5089-201ENST00000580047 84 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 AP005137.2-201ENST00000609238 400 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC1.37□□□□□ -2.19
COL7A1Q02388 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
COL7A1Q02388 MTND5P35-201ENST00000557537 1720 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 AC022336.2-201ENST00000568966 2538 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
COL7A1Q02388 AL627390.1-201ENST00000396055 340 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC1.37□□□□□ -2.19
COL7A1Q02388 ARPC3P1-201ENST00000437218 533 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC1.37□□□□□ -2.19
COL7A1Q02388 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC1.37□□□□□ -2.19
COL7A1Q02388 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC1.37□□□□□ -2.19
COL7A1Q02388 GSTA11P-201ENST00000452866 669 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 AL645939.1-201ENST00000453429 797 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 HAR1A.1-201ENST00000459583 118 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC1.37□□□□□ -2.19
COL7A1Q02388 HESX1-202ENST00000473921 757 ntTSL 5 BASIC1.37□□□□□ -2.19
COL7A1Q02388 SUMO2P4-201ENST00000504193 276 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC1.37□□□□□ -2.19
COL7A1Q02388 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.37□□□□□ -2.19
COL7A1Q02388 AC004486.1-201ENST00000546846 233 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC1.37□□□□□ -2.19
COL7A1Q02388 RPL21P5-201ENST00000554662 472 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC1.37□□□□□ -2.19
COL7A1Q02388 AL512598.1-201ENST00000610158 273 ntBASIC1.37□□□□□ -2.19
COL7A1Q02388 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
COL7A1Q02388 MIR1294-201ENST00000408503 142 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 LAMTOR5P1-201ENST00000444290 270 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 CDC42P1-201ENST00000456658 548 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 HMGN1P7-201ENST00000491722 313 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.36□□□□□ -2.19
COL7A1Q02388 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC1.36□□□□□ -2.19
COL7A1Q02388 PVT1_3.1-201ENST00000620853 95 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
COL7A1Q02388 AC005336.3-201ENST00000623833 2679 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 AC093775.1-201ENST00000624154 1868 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
COL7A1Q02388 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
COL7A1Q02388 RNU1-51P-201ENST00000365345 176 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
COL7A1Q02388 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
COL7A1Q02388 AC005005.2-201ENST00000420779 380 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 SAR1AP4-201ENST00000429225 591 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 AC244505.4-201ENST00000434905 287 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 HSPE1P28-201ENST00000443139 211 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 SSXP5-201ENST00000443473 287 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
COL7A1Q02388 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC1.36□□□□□ -2.19
COL7A1Q02388 AC073387.2-201ENST00000604797 784 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 AC067852.7-201ENST00000623270 535 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.36□□□□□ -2.19
COL7A1Q02388 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC1.36□□□□□ -2.19
COL7A1Q02388 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
COL7A1Q02388 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC1.36□□□□□ -2.19
COL7A1Q02388 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC1.36□□□□□ -2.19
COL7A1Q02388 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.36□□□□□ -2.19
COL7A1Q02388 MTND2P29-201ENST00000438595 412 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 BX322784.1-201ENST00000455793 1077 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC1.36□□□□□ -2.19
COL7A1Q02388 RPS26P24-201ENST00000497656 331 ntBASIC1.36□□□□□ -2.19
COL7A1Q02388 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC1.36□□□□□ -2.19
COL7A1Q02388 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC1.36□□□□□ -2.19
COL7A1Q02388 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC1.36□□□□□ -2.19
COL7A1Q02388 PWAR6-201ENST00000552334 4618 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.35□□□□□ -2.19
COL7A1Q02388 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC1.35□□□□□ -2.19
COL7A1Q02388 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
COL7A1Q02388 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms