Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC072039.2-201ENST00000608883 439 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC024941.1-201ENST00000612250 334 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AL139418.1-201ENST00000613613 177 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC018816.2-201ENST00000621460 353 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 RNA5SP196-201ENST00000625967 102 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 PCMTD1P7-201ENST00000634506 357 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.09□□□□□ -1.92
FOXA2Q9Y261 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
FOXA2Q9Y261 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.92
FOXA2Q9Y261 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
FOXA2Q9Y261 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
FOXA2Q9Y261 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 CR381670.1-201ENST00000624291 1693 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 RPL21P132-201ENST00000331267 462 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AL672167.1-206ENST00000356293 943 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 RNA5SP283-201ENST00000365604 119 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 RN7SKP266-201ENST00000410232 287 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AC018630.2-202ENST00000422992 927 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AC008850.1-201ENST00000427546 362 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AL035407.1-201ENST00000429211 571 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 TBCAP1-201ENST00000436520 327 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AC084357.1-201ENST00000473404 255 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 RN7SL132P-201ENST00000478131 296 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 RPL32P34-201ENST00000486380 400 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AC106872.3-201ENST00000495104 446 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AC147055.4-201ENST00000504399 745 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 RNU6-798P-201ENST00000516912 103 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 NDUFA5P2-201ENST00000519723 344 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 SETP2-201ENST00000553886 926 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AC099489.2-201ENST00000574976 260 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 MIR3160-1-201ENST00000577972 85 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AC053481.4-201ENST00000583164 216 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 MIR6875-201ENST00000617506 72 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 DDX10P1-201ENST00000448545 1933 ntBASIC3.08□□□□□ -1.92
FOXA2Q9Y261 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.08□□□□□ -1.92
FOXA2Q9Y261 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
FOXA2Q9Y261 OR4G2P-202ENST00000641004 1759 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 SDAD1P2-201ENST00000441308 2028 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
FOXA2Q9Y261 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
FOXA2Q9Y261 RNU4-28P-201ENST00000364739 141 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 HIGD1AP15-201ENST00000416198 280 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AC245054.1-201ENST00000420944 258 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AL022400.1-201ENST00000423946 935 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AC091862.1-201ENST00000438016 1100 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AL591503.2-201ENST00000442314 1005 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.07□□□□□ -1.92
FOXA2Q9Y261 CDC27P1-201ENST00000445384 715 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AP000542.1-201ENST00000448473 371 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AC140076.1-201ENST00000449897 361 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.07□□□□□ -1.92
FOXA2Q9Y261 RN7SL330P-201ENST00000469709 307 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.07□□□□□ -1.92
FOXA2Q9Y261 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.07□□□□□ -1.92
FOXA2Q9Y261 VN1R105P-201ENST00000486595 910 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 RPS4XP15-201ENST00000489210 795 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AC006445.2-201ENST00000510061 472 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AC110760.3-202ENST00000515177 371 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 RN7SKP265-201ENST00000516448 223 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 RN7SKP21-201ENST00000516503 220 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AP001372.4-201ENST00000524889 472 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.07□□□□□ -1.92
FOXA2Q9Y261 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
FOXA2Q9Y261 MTND1P24-201ENST00000552175 861 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 RPL23AP84-201ENST00000571193 464 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.07□□□□□ -1.92
FOXA2Q9Y261 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.07□□□□□ -1.92
FOXA2Q9Y261 VN1R92P-201ENST00000598511 928 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AL031985.2-201ENST00000600955 480 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 VN1R85P-201ENST00000601587 426 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AC067959.1-201ENST00000604334 379 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 AP000240.1-201ENST00000609910 452 ntBASIC3.07□□□□□ -1.92
FOXA2Q9Y261 MIR6798-201ENST00000612887 67 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms