Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 PRSS3P4-201ENST00000453323 162 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 RPL21P104-201ENST00000464143 478 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 Vault.3-201ENST00000516676 95 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 DUXAP2-201ENST00000519198 589 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AF038458.1-201ENST00000588406 262 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC068790.2-201ENST00000602601 557 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC245014.2-201ENST00000603689 287 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AL136363.2-201ENST00000604173 851 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC246785.4-201ENST00000605374 287 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AL451086.1-201ENST00000605596 223 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC005332.10-201ENST00000612725 619 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 uc_338.13-201ENST00000618243 179 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC095031.1-201ENST00000623685 672 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AC116096.1-201ENST00000566804 2314 ntBASIC6□□□□□ -1.45
CCDC9Q9Y3X0 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC9Q9Y3X0 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AC011755.1-201ENST00000623763 2049 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AC067945.1-201ENST00000342609 618 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 RNY1P12-201ENST00000364251 105 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 SNORA23-201ENST00000365128 182 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 RNA5SP107-201ENST00000411358 122 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 RPL21P24-201ENST00000413752 448 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 BX295541.1-201ENST00000417774 250 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AC018644.1-201ENST00000429934 551 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AL136380.1-201ENST00000447970 162 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AC008481.1-201ENST00000463278 396 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AC114797.1-201ENST00000514003 728 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 MTCO2P4-201ENST00000517968 247 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AC011979.2-201ENST00000527568 352 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AC146944.4-201ENST00000602697 718 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AC039056.2-201ENST00000622261 511 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 AC139769.1-204ENST00000472297 1931 ntBASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
CCDC9Q9Y3X0 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 OR1S2-201ENST00000302592 978 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 MIR483-201ENST00000385070 76 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 Y_RNA.582-201ENST00000391023 95 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 RPL21P65-201ENST00000406094 466 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AL603766.1-201ENST00000407763 664 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 ELOCP4-201ENST00000420090 333 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 USP9YP36-201ENST00000424581 829 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AC010975.2-201ENST00000427781 588 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 DHFRP3-201ENST00000455595 559 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 VN1R17P-201ENST00000472048 1090 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 RNA5SP337-201ENST00000517007 109 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 RNU6-64P-201ENST00000517119 105 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AC135001.1-201ENST00000544546 283 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AC245505.1-201ENST00000556398 224 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 RN7SL703P-201ENST00000578485 302 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 RN7SL600P-201ENST00000581811 299 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AL161729.4-201ENST00000604650 476 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AC012468.1-201ENST00000604888 430 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AL049634.3-201ENST00000604968 457 ntBASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms