Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC239367.2-201ENST00000447309 705 ntBASIC3.06□□□□□ -1.92
SDC1P18827 snoU13.24-201ENST00000458998 104 ntBASIC3.06□□□□□ -1.92
SDC1P18827 AC008155.2-201ENST00000464337 397 ntBASIC3.06□□□□□ -1.92
SDC1P18827 MTND1P16-201ENST00000465177 898 ntBASIC3.06□□□□□ -1.92
SDC1P18827 AC020898.1-201ENST00000474167 787 ntBASIC3.06□□□□□ -1.92
SDC1P18827 KCTD9P5-201ENST00000504141 1170 ntBASIC3.06□□□□□ -1.92
SDC1P18827 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.06□□□□□ -1.92
SDC1P18827 AC109445.1-201ENST00000512356 383 ntBASIC3.06□□□□□ -1.92
SDC1P18827 AC006499.2-201ENST00000513470 337 ntBASIC3.06□□□□□ -1.92
SDC1P18827 RNU6-1073P-201ENST00000517182 106 ntBASIC3.06□□□□□ -1.92
SDC1P18827 AC109635.4-202ENST00000531666 412 ntBASIC3.06□□□□□ -1.92
SDC1P18827 HIGD1AP1-201ENST00000550979 275 ntBASIC3.06□□□□□ -1.92
SDC1P18827 AL121603.1-201ENST00000553815 142 ntBASIC3.06□□□□□ -1.92
SDC1P18827 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.06□□□□□ -1.92
SDC1P18827 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.06□□□□□ -1.92
SDC1P18827 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.06□□□□□ -1.92
SDC1P18827 MIR2682-201ENST00000580305 110 ntBASIC3.06□□□□□ -1.92
SDC1P18827 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.06□□□□□ -1.92
SDC1P18827 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.06□□□□□ -1.92
SDC1P18827 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
SDC1P18827 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
SDC1P18827 AP001350.1-201ENST00000601906 1524 ntBASIC3.06□□□□□ -1.92
SDC1P18827 AL591516.1-201ENST00000611326 274 ntBASIC3.06□□□□□ -1.92
SDC1P18827 AC025588.4-201ENST00000615802 908 ntBASIC3.06□□□□□ -1.92
SDC1P18827 AC006963.1-201ENST00000624003 1052 ntBASIC3.06□□□□□ -1.92
SDC1P18827 AL049780.3-201ENST00000624612 1583 ntBASIC3.06□□□□□ -1.92
SDC1P18827 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.06□□□□□ -1.92
SDC1P18827 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.06□□□□□ -1.92
SDC1P18827 AL021368.2-201ENST00000606125 5352 ntBASIC3.06□□□□□ -1.92
SDC1P18827 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.05□□□□□ -1.92
SDC1P18827 AC138915.3-201ENST00000562908 1389 ntBASIC3.05□□□□□ -1.92
SDC1P18827 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SDC1P18827 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SDC1P18827 RNU1-33P-201ENST00000364249 162 ntBASIC3.05□□□□□ -1.92
SDC1P18827 Y_RNA.311-201ENST00000365068 96 ntBASIC3.05□□□□□ -1.92
SDC1P18827 SNORD51-201ENST00000384320 80 ntBASIC3.05□□□□□ -1.92
SDC1P18827 RPL23AP29-201ENST00000397284 453 ntBASIC3.05□□□□□ -1.92
SDC1P18827 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SDC1P18827 AC063979.1-201ENST00000415539 377 ntBASIC3.05□□□□□ -1.92
SDC1P18827 TIMM9P2-201ENST00000419324 266 ntBASIC3.05□□□□□ -1.92
SDC1P18827 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.05□□□□□ -1.92
SDC1P18827 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC1P18827 NEK4P1-201ENST00000433383 879 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.05□□□□□ -1.92
SDC1P18827 Z80107.1-201ENST00000436830 412 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.05□□□□□ -1.92
SDC1P18827 FTH1P1-201ENST00000437933 532 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.05□□□□□ -1.92
SDC1P18827 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC1P18827 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC3.05□□□□□ -1.92
SDC1P18827 CR769776.1-201ENST00000441254 787 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.05□□□□□ -1.92
SDC1P18827 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.05□□□□□ -1.92
SDC1P18827 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.05□□□□□ -1.92
SDC1P18827 snoU109.4-201ENST00000458953 143 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AC091564.1-201ENST00000464563 479 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AC114981.1-201ENST00000503897 678 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AC091951.3-201ENST00000504093 246 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC1P18827 XKRY-201ENST00000510392 1100 ntBASIC3.05□□□□□ -1.92
SDC1P18827 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC1P18827 RNU6-311P-201ENST00000516224 102 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AC245166.1-201ENST00000521012 253 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC1P18827 AC024224.1-201ENST00000538284 609 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC1P18827 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.05□□□□□ -1.92
SDC1P18827 MTND4P33-201ENST00000556706 766 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AL512347.1-201ENST00000566420 503 ntBASIC3.05□□□□□ -1.92
SDC1P18827 MIR4760-201ENST00000585040 80 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AC090425.2-201ENST00000608818 501 ntBASIC3.05□□□□□ -1.92
SDC1P18827 uc_338.25-201ENST00000613756 156 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AC009464.1-201ENST00000615731 469 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AC023510.2-201ENST00000622162 746 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AC004009.2-201ENST00000623016 728 ntBASIC3.05□□□□□ -1.92
SDC1P18827 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.05□□□□□ -1.92
SDC1P18827 AL049781.1-201ENST00000623195 3585 ntBASIC3.05□□□□□ -1.92
SDC1P18827 AC093908.1-201ENST00000623125 8092 ntBASIC3.05□□□□□ -1.92
SDC1P18827 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SDC1P18827 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.04□□□□□ -1.92
SDC1P18827 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SDC1P18827 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
SDC1P18827 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.04□□□□□ -1.92
SDC1P18827 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.04□□□□□ -1.92
SDC1P18827 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.04□□□□□ -1.92
SDC1P18827 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.04□□□□□ -1.92
SDC1P18827 MTND2P19-201ENST00000449129 1012 ntBASIC3.04□□□□□ -1.92
SDC1P18827 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.04□□□□□ -1.92
SDC1P18827 NECAP1P2-201ENST00000455668 727 ntBASIC3.04□□□□□ -1.92
SDC1P18827 AC093278.1-201ENST00000494700 600 ntBASIC3.04□□□□□ -1.92
SDC1P18827 AC090453.1-201ENST00000495560 436 ntBASIC3.04□□□□□ -1.92
SDC1P18827 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.04□□□□□ -1.92
SDC1P18827 AC006390.1-201ENST00000508068 283 ntBASIC3.04□□□□□ -1.92
SDC1P18827 AC002456.2-201ENST00000509356 380 ntBASIC3.04□□□□□ -1.92
SDC1P18827 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.04□□□□□ -1.92
SDC1P18827 RNA5SP380-201ENST00000517190 98 ntBASIC3.04□□□□□ -1.92
SDC1P18827 HSPA8P13-201ENST00000523715 472 ntBASIC3.04□□□□□ -1.92
SDC1P18827 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SDC1P18827 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.04□□□□□ -1.92
SDC1P18827 NBEAP1-201ENST00000554452 979 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 147.6 ms