Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AL450326.2-201ENST00000421913 1962 ntBASIC3.6□□□□□ -1.83
SIX2Q9NPC8 MTND5P28-201ENST00000438005 1594 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AF117829.1-206ENST00000621883 3802 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC114546.3-201ENST00000623582 1734 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 MIR490-201ENST00000384865 128 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 MIR554-201ENST00000384874 96 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 RPS3AP26-201ENST00000398259 784 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 RNA5SP229-201ENST00000410809 99 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 RPS15AP38-201ENST00000413110 372 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 RPL23AP39-201ENST00000415533 405 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 HSFY4P-201ENST00000415994 1181 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 RPL31P12-201ENST00000422587 358 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AL953862.1-201ENST00000423016 168 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC096632.1-201ENST00000427395 310 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC244035.1-201ENST00000430042 390 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 GOT2P5-201ENST00000433995 546 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 KCTD10P1-201ENST00000434203 625 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 THAP5P1-201ENST00000439089 262 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC092427.1-201ENST00000439177 601 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 TPTE2P5-203ENST00000458118 728 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC092757.1-201ENST00000467293 467 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 MTND4LP3-201ENST00000468320 276 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 OR2A20P-203ENST00000498397 1268 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC090071.1-201ENST00000507713 644 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC110792.2-201ENST00000510278 224 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC023632.4-201ENST00000517783 191 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 CYCSP2-201ENST00000558168 301 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 MIR4504-201ENST00000577413 92 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC006557.5-201ENST00000603126 811 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC083899.3-201ENST00000603413 594 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AL596327.1-201ENST00000603629 213 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC243773.3-201ENST00000613270 256 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC011939.3-201ENST00000613686 466 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AC018816.2-201ENST00000621460 353 ntBASIC3.59□□□□□ -1.83
SIX2Q9NPC8 AL049781.1-201ENST00000623195 3585 ntBASIC3.59□□□□□ -1.84
SIX2Q9NPC8 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
SIX2Q9NPC8 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
SIX2Q9NPC8 MTCO1P14-201ENST00000441695 1559 ntBASIC3.59□□□□□ -1.84
SIX2Q9NPC8 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.59□□□□□ -1.84
SIX2Q9NPC8 AL079343.1-201ENST00000572358 1771 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AC011155.1-201ENST00000316512 456 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 RPL21P132-201ENST00000331267 462 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 Y_RNA.201-201ENST00000364052 96 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 Y_RNA.302-201ENST00000364997 102 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 SNRPEP2-201ENST00000397592 279 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AL512430.2-201ENST00000406786 339 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AL133384.1-201ENST00000412744 351 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 NUP35P2-201ENST00000416748 943 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 NPM1P11-201ENST00000417106 855 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AC073136.2-201ENST00000417282 849 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 CYP4F29P-201ENST00000420685 446 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AC122718.1-201ENST00000439448 744 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 RPL23AP16-201ENST00000441715 421 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 VN1R10P-201ENST00000447106 875 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 RPL39P6-201ENST00000448289 150 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AC008155.2-201ENST00000464337 397 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 RAP1BP2-201ENST00000478270 544 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 MTATP6P22-201ENST00000507369 598 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AC020593.1-201ENST00000507399 299 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 MTND5P13-201ENST00000513046 1079 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AC006499.2-201ENST00000513470 337 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 RNU1-143P-201ENST00000516296 146 ntBASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.58□□□□□ -1.84
SIX2Q9NPC8 AC106038.2-201ENST00000520706 568 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms