Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 ATG3P1-201ENST00000419507 911 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.5□□□□□ -2.17
COL7A1Q02388 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC1.5□□□□□ -2.17
COL7A1Q02388 NDUFB4P6-201ENST00000436819 366 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 RPS15AP17-201ENST00000470598 390 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AC068305.1-201ENST00000497406 726 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.5□□□□□ -2.17
COL7A1Q02388 RNA5SP76-201ENST00000516277 87 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC1.5□□□□□ -2.17
COL7A1Q02388 OOSP1P2-201ENST00000579644 351 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC1.5□□□□□ -2.17
COL7A1Q02388 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC1.5□□□□□ -2.17
COL7A1Q02388 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC1.5□□□□□ -2.17
COL7A1Q02388 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
COL7A1Q02388 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
COL7A1Q02388 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.5□□□□□ -2.17
COL7A1Q02388 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
COL7A1Q02388 SNORA67.5-201ENST00000391036 107 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 MTCO3P31-201ENST00000405526 789 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC1.5□□□□□ -2.17
COL7A1Q02388 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.5□□□□□ -2.17
COL7A1Q02388 AC009238.1-201ENST00000442165 424 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AC009237.6-201ENST00000446969 424 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC1.5□□□□□ -2.17
COL7A1Q02388 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.5□□□□□ -2.17
COL7A1Q02388 HIGD1AP10-201ENST00000527837 282 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 OR4H12P-201ENST00000556269 907 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC1.5□□□□□ -2.17
COL7A1Q02388 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC1.5□□□□□ -2.17
COL7A1Q02388 AC093909.5-201ENST00000621839 1799 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
COL7A1Q02388 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
COL7A1Q02388 RNA5SP190-201ENST00000365222 118 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
COL7A1Q02388 AL356806.1-201ENST00000422524 916 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 RPS27P29-201ENST00000463110 252 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 RN7SL297P-201ENST00000483161 293 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 AC055876.1-202ENST00000567053 138 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 MIR5002-201ENST00000584713 97 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC1.49□□□□□ -2.17
COL7A1Q02388 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.49□□□□□ -2.17
COL7A1Q02388 RMST_2.1-201ENST00000617263 136 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 MIR6733-201ENST00000635723 61 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 AC107021.2-201ENST00000567714 2095 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
COL7A1Q02388 SNORA51.4-201ENST00000364993 124 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 RNU6-356P-201ENST00000384140 107 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 SDCBPP3-201ENST00000419629 891 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 AC003989.2-201ENST00000440224 169 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 AL591719.1-201ENST00000444669 744 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 RNU7-95P-201ENST00000459222 64 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC1.49□□□□□ -2.17
COL7A1Q02388 HMGB1P41-201ENST00000520234 440 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 DNAJC19P9-201ENST00000555084 351 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 AL731537.2-201ENST00000561565 951 ntBASIC1.49□□□□□ -2.17
COL7A1Q02388 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC1.48□□□□□ -2.17
COL7A1Q02388 RPL23AP39-201ENST00000415533 405 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC1.48□□□□□ -2.17
COL7A1Q02388 AL445669.2-201ENST00000454425 421 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 KPNA2P1-201ENST00000458289 1591 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 RN7SKP60-201ENST00000516985 239 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 MTCYBP19-201ENST00000517463 1124 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.48□□□□□ -2.17
COL7A1Q02388 AC093536.2-201ENST00000565257 1406 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
COL7A1Q02388 AC007620.3-201ENST00000608131 497 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 CYP3A51P-201ENST00000633513 256 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
COL7A1Q02388 API5P2-201ENST00000397055 1498 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.48□□□□□ -2.17
COL7A1Q02388 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
COL7A1Q02388 AC008264.2-201ENST00000610193 3731 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 PNPT1P2-201ENST00000456768 2050 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
COL7A1Q02388 RNU6-984P-201ENST00000363236 109 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 RN7SKP226-201ENST00000364912 300 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 AC004965.1-201ENST00000413033 213 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 snoZ278.1-201ENST00000517059 112 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 AP003467.2-201ENST00000520175 319 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 AC093331.1-201ENST00000521474 169 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC1.48□□□□□ -2.17
COL7A1Q02388 AC084035.1-201ENST00000634543 607 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
COL7A1Q02388 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
COL7A1Q02388 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
COL7A1Q02388 AL139811.1-201ENST00000424779 2299 ntBASIC1.48□□□□□ -2.17
COL7A1Q02388 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC1.47□□□□□ -2.17
COL7A1Q02388 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC1.47□□□□□ -2.17
COL7A1Q02388 OFD1P1Y-201ENST00000411756 1225 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 EI24P1-201ENST00000416584 867 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.47□□□□□ -2.17
COL7A1Q02388 HMGN1P33-201ENST00000432945 451 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.47□□□□□ -2.17
COL7A1Q02388 AC140059.1-201ENST00000489238 361 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 AC021146.8-201ENST00000507455 733 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.47□□□□□ -2.17
COL7A1Q02388 AC123904.3-201ENST00000547218 814 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC1.47□□□□□ -2.17
COL7A1Q02388 AL845331.3-202ENST00000562856 261 ntBASIC1.47□□□□□ -2.17
COL7A1Q02388 WISP1-OT1-201ENST00000602893 642 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms