Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MIR134-201ENST00000385258 73 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 AL162578.1-201ENST00000406202 378 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 RNA5SP21-201ENST00000410917 96 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 RNU4-78P-201ENST00000410940 126 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA3P55318 Z75741.2-201ENST00000417272 1167 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
FOXA3P55318 AC006548.1-201ENST00000427470 102 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA3P55318 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC1.91□□□□□ -2.1
FOXA3P55318 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC1.91□□□□□ -2.1
FOXA3P55318 MRPL42P6-201ENST00000486397 371 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
FOXA3P55318 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA3P55318 RNA5SP471-201ENST00000516971 106 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC1.91□□□□□ -2.1
FOXA3P55318 AP001804.3-201ENST00000525146 880 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC1.91□□□□□ -2.1
FOXA3P55318 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA3P55318 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA3P55318 AC034105.4-201ENST00000568304 277 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA3P55318 AC103810.1-201ENST00000579873 453 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 XIAPP1-201ENST00000603162 600 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA3P55318 AC006329.2-201ENST00000611491 394 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 ATP5A1P2-202ENST00000616464 443 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC1.91□□□□□ -2.1
FOXA3P55318 MIR7975-201ENST00000619350 68 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC1.91□□□□□ -2.1
FOXA3P55318 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC1.91□□□□□ -2.1
FOXA3P55318 AC024023.1-201ENST00000624530 922 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 CR381572.1-201ENST00000625098 102 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 CRYM-AS1-204ENST00000637983 556 ntBASIC1.91□□□□□ -2.1
FOXA3P55318 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA3P55318 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
FOXA3P55318 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
FOXA3P55318 AL139276.1-201ENST00000311910 1001 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
FOXA3P55318 OR5H2-201ENST00000355273 945 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 Y_RNA.126-201ENST00000363382 111 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 RNA5SP456-201ENST00000364002 114 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA3P55318 SNORA18.3-201ENST00000384122 132 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 DSTNP4-201ENST00000399472 474 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 AF274854.1-201ENST00000413236 615 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA3P55318 AL389915.1-201ENST00000422463 466 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.11
FOXA3P55318 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC1.9□□□□□ -2.11
FOXA3P55318 AL590762.3-201ENST00000436372 640 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA3P55318 AL645638.1-201ENST00000440519 361 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA3P55318 RPS29P26-201ENST00000477483 171 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 RPS4XP6-201ENST00000477670 797 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 RPS15AP34-201ENST00000487776 387 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 WBP1LP4-201ENST00000505043 344 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 AC114322.1-201ENST00000506771 926 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC1.9□□□□□ -2.11
FOXA3P55318 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA3P55318 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA3P55318 AP003467.2-201ENST00000520175 319 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA3P55318 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC1.9□□□□□ -2.11
FOXA3P55318 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA3P55318 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC1.9□□□□□ -2.11
FOXA3P55318 AP005205.1-201ENST00000563503 508 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 CYCSP39-201ENST00000565821 309 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC1.9□□□□□ -2.11
FOXA3P55318 AC007336.1-201ENST00000576365 3828 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA3P55318 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC1.9□□□□□ -2.11
FOXA3P55318 VN1R78P-201ENST00000597393 564 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 AC006539.2-201ENST00000601729 572 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 AC068880.5-201ENST00000624331 290 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC1.9□□□□□ -2.11
FOXA3P55318 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
FOXA3P55318 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
FOXA3P55318 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
FOXA3P55318 AC005336.3-201ENST00000623833 2679 ntBASIC1.9□□□□□ -2.11
FOXA3P55318 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
FOXA3P55318 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.9□□□□□ -2.11
FOXA3P55318 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC1.89□□□□□ -2.11
FOXA3P55318 MTND4P8-201ENST00000514997 1362 ntBASIC1.89□□□□□ -2.11
FOXA3P55318 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC1.89□□□□□ -2.11
FOXA3P55318 RPL21P132-201ENST00000331267 462 ntBASIC1.89□□□□□ -2.11
FOXA3P55318 RNU1-51P-201ENST00000365345 176 ntBASIC1.89□□□□□ -2.11
FOXA3P55318 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC1.89□□□□□ -2.11
FOXA3P55318 RNU6-339P-201ENST00000384310 107 ntBASIC1.89□□□□□ -2.11
FOXA3P55318 AL138827.1-201ENST00000402666 306 ntBASIC1.89□□□□□ -2.11
FOXA3P55318 SNORA11C-201ENST00000408532 129 ntBASIC1.89□□□□□ -2.11
FOXA3P55318 RNU4-74P-201ENST00000411280 161 ntBASIC1.89□□□□□ -2.11
FOXA3P55318 RPL7P30-201ENST00000420888 709 ntBASIC1.89□□□□□ -2.11
FOXA3P55318 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
FOXA3P55318 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC1.89□□□□□ -2.11
FOXA3P55318 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC1.89□□□□□ -2.11
FOXA3P55318 AC008280.2-201ENST00000455473 307 ntBASIC1.89□□□□□ -2.11
FOXA3P55318 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC1.89□□□□□ -2.11
FOXA3P55318 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms