Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MTATP6P3-201ENST00000581686 676 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.7□□□□□ -1.66
SMARCA1P28370 RPL23AP92-201ENST00000603609 255 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AL390208.1-201ENST00000605885 644 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AC138749.5-201ENST00000611461 208 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AC131902.3-201ENST00000611767 581 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AC092794.1-201ENST00000612734 582 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AC116165.2-201ENST00000616705 206 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AC095031.1-201ENST00000623685 672 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AC068724.3-201ENST00000625906 87 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SMARCA1P28370 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SMARCA1P28370 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SMARCA1P28370 RLIMP1-201ENST00000339626 1680 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.7□□□□□ -1.66
SMARCA1P28370 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SMARCA1P28370 AL359893.1-201ENST00000447628 1580 ntBASIC4.7□□□□□ -1.66
SMARCA1P28370 AP002001.2-201ENST00000529025 1469 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.69□□□□□ -1.66
SMARCA1P28370 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SMARCA1P28370 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SMARCA1P28370 Y_RNA.608-201ENST00000410647 95 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 MTCO1P17-201ENST00000411522 491 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.69□□□□□ -1.66
SMARCA1P28370 MTCO2P5-201ENST00000422621 426 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 AL590233.1-201ENST00000430017 456 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC4.69□□□□□ -1.66
SMARCA1P28370 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC4.69□□□□□ -1.66
SMARCA1P28370 PGBD4P3-201ENST00000440731 581 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 RPS4XP4-201ENST00000443195 763 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SMARCA1P28370 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.69□□□□□ -1.66
SMARCA1P28370 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC4.69□□□□□ -1.66
SMARCA1P28370 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.69□□□□□ -1.66
SMARCA1P28370 Z82190.1-201ENST00000454534 490 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.69□□□□□ -1.66
SMARCA1P28370 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.69□□□□□ -1.66
SMARCA1P28370 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC4.69□□□□□ -1.66
SMARCA1P28370 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.69□□□□□ -1.66
SMARCA1P28370 RNU4-60P-201ENST00000517239 135 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC4.69□□□□□ -1.66
SMARCA1P28370 IFITM8P-201ENST00000522529 394 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SMARCA1P28370 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC4.69□□□□□ -1.66
SMARCA1P28370 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.69□□□□□ -1.66
SMARCA1P28370 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.69□□□□□ -1.66
SMARCA1P28370 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.69□□□□□ -1.66
SMARCA1P28370 AC009977.1-201ENST00000586015 570 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC4.69□□□□□ -1.66
SMARCA1P28370 AL139286.1-201ENST00000604465 483 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 ZYXP1-201ENST00000617638 118 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC4.69□□□□□ -1.66
SMARCA1P28370 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.69□□□□□ -1.66
SMARCA1P28370 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.69□□□□□ -1.66
SMARCA1P28370 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SMARCA1P28370 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.69□□□□□ -1.66
SMARCA1P28370 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
SMARCA1P28370 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.69□□□□□ -1.66
SMARCA1P28370 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.69□□□□□ -1.66
SMARCA1P28370 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SMARCA1P28370 MARK2P15-201ENST00000432204 2186 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
SMARCA1P28370 CCT4P2-201ENST00000233836 1548 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 ZNF734P-201ENST00000419494 1534 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SMARCA1P28370 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SMARCA1P28370 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.68□□□□□ -1.66
SMARCA1P28370 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SMARCA1P28370 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SMARCA1P28370 RNU6-744P-201ENST00000365557 107 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC4.68□□□□□ -1.66
SMARCA1P28370 RNU6-1316P-201ENST00000384242 108 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 MIR3074-201ENST00000384885 81 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 FCF1P9-201ENST00000412546 282 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 RPL36AP36-201ENST00000418616 301 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 GLRXP1-201ENST00000423261 334 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 AC005517.2-201ENST00000424673 553 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 AC007742.1-201ENST00000425789 329 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 PSMA6P3-201ENST00000428242 164 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.68□□□□□ -1.66
SMARCA1P28370 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.68□□□□□ -1.66
SMARCA1P28370 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC4.68□□□□□ -1.66
SMARCA1P28370 ELOCP26-201ENST00000436067 329 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 AC127537.2-201ENST00000439258 465 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.68□□□□□ -1.66
SMARCA1P28370 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.68□□□□□ -1.66
SMARCA1P28370 SNORD108-201ENST00000459332 71 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 AL672167.3-201ENST00000465951 960 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SMARCA1P28370 AC023424.2-201ENST00000493479 777 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.68□□□□□ -1.66
SMARCA1P28370 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.68□□□□□ -1.66
SMARCA1P28370 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
SMARCA1P28370 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.68□□□□□ -1.66
SMARCA1P28370 MIR3913-1-201ENST00000577744 102 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.68□□□□□ -1.66
SMARCA1P28370 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.68□□□□□ -1.66
SMARCA1P28370 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC4.68□□□□□ -1.66
SMARCA1P28370 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms