Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.61□□□□□ -1.83
VMP1Q96GC9 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 RPL23AP57-201ENST00000332361 466 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 Y_RNA.472-201ENST00000384322 102 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 MIR30B-201ENST00000384850 88 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 MIR199A2-201ENST00000385289 110 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 TPMTP2-201ENST00000414372 726 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 RPL36AP36-201ENST00000418616 301 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 TIMM9P2-201ENST00000419324 266 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 NDUFB4P6-201ENST00000436819 366 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 MTCO1P53-201ENST00000441633 699 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 RPL23AP76-201ENST00000441860 458 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 ARPC3P5-201ENST00000448802 534 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VMP1Q96GC9 AC011979.1-201ENST00000472300 483 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 AC092185.1-201ENST00000491371 97 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 RPL7P24-201ENST00000493052 752 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 AC008837.2-201ENST00000513076 418 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 AC017037.2-201ENST00000513850 890 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 RN7SKP60-201ENST00000516985 239 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 AC239860.2-201ENST00000525886 270 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 AC105224.1-201ENST00000587055 421 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 BRDTP1-201ENST00000605735 677 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 AP000254.1-201ENST00000609934 520 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VMP1Q96GC9 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.6□□□□□ -1.83
VMP1Q96GC9 AP004289.2-201ENST00000444413 1457 ntBASIC3.6□□□□□ -1.83
VMP1Q96GC9 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 MIR554-201ENST00000384874 96 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 RPL32P23-201ENST00000397237 405 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 MIR1290-201ENST00000408735 78 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 RN7SKP156-201ENST00000410308 342 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 RNA5SP80-201ENST00000410475 111 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 SNORA57.3-201ENST00000411095 141 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 CYCSP19-201ENST00000411715 316 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 AC017079.2-201ENST00000416102 485 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 BX842559.1-201ENST00000419615 532 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 AL139421.1-201ENST00000423010 169 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 RPL26P28-201ENST00000451325 435 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 AL031183.1-201ENST00000457667 207 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VMP1Q96GC9 FAM172BP-201ENST00000487497 1089 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 KCTD9P5-201ENST00000504141 1170 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 PCBP2P3-201ENST00000509726 843 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VMP1Q96GC9 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VMP1Q96GC9 DNAJC8P1-201ENST00000554535 372 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 MIR4738-201ENST00000579134 87 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 BNIP3P27-201ENST00000599991 412 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 HSPE1P7-201ENST00000604681 321 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 AC092354.2-201ENST00000607786 514 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 AL590099.1-201ENST00000615276 138 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 AL121895.2-201ENST00000619558 447 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 AC018816.2-201ENST00000621460 353 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 AC034229.5-201ENST00000624258 185 ntBASIC3.59□□□□□ -1.83
VMP1Q96GC9 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.59□□□□□ -1.83
VMP1Q96GC9 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
VMP1Q96GC9 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.59□□□□□ -1.84
VMP1Q96GC9 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
VMP1Q96GC9 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VMP1Q96GC9 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VMP1Q96GC9 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VMP1Q96GC9 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VMP1Q96GC9 NACA3P-201ENST00000359690 648 ntBASIC3.58□□□□□ -1.84
VMP1Q96GC9 RNU6-560P-201ENST00000364007 108 ntBASIC3.58□□□□□ -1.84
VMP1Q96GC9 CD24P4-201ENST00000382840 243 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms