Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 Y_RNA.548-201ENST00000384656 105 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 CYB5AP4-201ENST00000396692 399 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AL583834.1-201ENST00000406943 343 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 RPL36AP10-201ENST00000421785 322 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 CHIAP3-201ENST00000423668 1133 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 OR2B7P-201ENST00000429302 934 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC005534.2-201ENST00000431047 433 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 RPS29P9-201ENST00000440360 171 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 RAD23BP3-201ENST00000454157 1152 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 RPS20P32-201ENST00000456044 356 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AL049874.2-201ENST00000492636 288 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC112204.1-201ENST00000502591 103 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 KCTD9P5-201ENST00000504141 1170 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC108064.1-201ENST00000513791 460 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC100784.1-201ENST00000522790 310 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AP003072.1-201ENST00000531740 145 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC027369.5-201ENST00000533838 755 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC025678.1-201ENST00000567861 338 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AC034268.2-201ENST00000571784 482 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 MTCYBP13-201ENST00000578634 1093 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 MIR3671-201ENST00000580455 88 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 MIR4737-201ENST00000583979 81 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 OR6R2P-201ENST00000609216 300 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AL161616.1-201ENST00000611867 286 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AL590099.1-201ENST00000615276 138 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 AL049794.2-201ENST00000616301 365 ntBASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.71□□□□□ -1.66
CLIP3Q96DZ5 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AC011266.1-201ENST00000624119 3569 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 ZBTB8OSP1-201ENST00000342688 498 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 RPL21P67-201ENST00000402896 478 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AL359704.1-201ENST00000411586 781 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 BX295541.1-201ENST00000417774 250 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AL513185.2-201ENST00000425543 193 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 RABEPKP1-201ENST00000440529 1026 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 MTND6P13-201ENST00000443510 523 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AC079448.1-201ENST00000449377 373 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AL590365.1-201ENST00000450788 243 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 Z82190.1-201ENST00000454534 490 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AP1S2P1-201ENST00000457344 379 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 ACTR3P3-201ENST00000480448 893 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AC011005.3-201ENST00000491624 395 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 RN7SL441P-201ENST00000492388 296 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 RPS4XP18-201ENST00000495480 763 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AC016559.2-201ENST00000510759 359 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 SETP2-201ENST00000553886 926 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AC020910.3-201ENST00000603701 874 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AC093838.1-201ENST00000613014 469 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AL356585.4-201ENST00000623078 1229 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 DHX40P1-201ENST00000588725 1412 ntBASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.7□□□□□ -1.66
CLIP3Q96DZ5 AL391684.1-202ENST00000641293 1636 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 SNORD56.2-201ENST00000363242 71 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AL049693.1-201ENST00000402760 611 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 AC009237.10-201ENST00000414112 510 ntBASIC4.69□□□□□ -1.66
CLIP3Q96DZ5 RPL26P29-201ENST00000415623 438 ntBASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms