Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.81□□□□□ -1.64
NUP88Q99567 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC4.81□□□□□ -1.64
NUP88Q99567 AC093677.1-201ENST00000514414 678 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 FABP5P5-201ENST00000515537 406 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 RNA5SP154-201ENST00000516193 111 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.81□□□□□ -1.64
NUP88Q99567 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.81□□□□□ -1.64
NUP88Q99567 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.81□□□□□ -1.64
NUP88Q99567 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC4.81□□□□□ -1.64
NUP88Q99567 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC4.81□□□□□ -1.64
NUP88Q99567 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.81□□□□□ -1.64
NUP88Q99567 MIR5697-201ENST00000578045 78 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.81□□□□□ -1.64
NUP88Q99567 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.81□□□□□ -1.64
NUP88Q99567 AC093227.2-201ENST00000589357 285 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.81□□□□□ -1.64
NUP88Q99567 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.81□□□□□ -1.64
NUP88Q99567 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
NUP88Q99567 AC087190.4-201ENST00000574616 8334 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
NUP88Q99567 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
NUP88Q99567 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
NUP88Q99567 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
NUP88Q99567 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.81□□□□□ -1.64
NUP88Q99567 AP002001.2-201ENST00000529025 1469 ntBASIC4.81□□□□□ -1.64
NUP88Q99567 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
NUP88Q99567 AC011266.1-201ENST00000624119 3569 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 AC092447.10-201ENST00000620607 1652 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NUP88Q99567 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.8□□□□□ -1.64
NUP88Q99567 AC105074.1-201ENST00000623380 3095 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 RNU6-989P-201ENST00000362756 107 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 Y_RNA.234-201ENST00000364409 97 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 U3.15-201ENST00000365398 212 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
NUP88Q99567 MIR1179-201ENST00000408703 91 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 RN7SKP56-201ENST00000410513 331 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP88Q99567 ZNF885P-201ENST00000420174 1098 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 RPL7P2-201ENST00000427639 268 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 AC096638.2-201ENST00000434965 711 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.8□□□□□ -1.64
NUP88Q99567 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP88Q99567 Z82190.1-201ENST00000454534 490 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP88Q99567 SNORA84-201ENST00000459229 133 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 AC113430.1-201ENST00000506872 718 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP88Q99567 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP88Q99567 AC079140.3-201ENST00000511111 550 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 MTND4LP31-201ENST00000514859 294 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP88Q99567 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NUP88Q99567 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC4.8□□□□□ -1.64
NUP88Q99567 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC4.8□□□□□ -1.64
NUP88Q99567 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NUP88Q99567 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP88Q99567 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC4.8□□□□□ -1.64
NUP88Q99567 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP88Q99567 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP88Q99567 AC053481.4-201ENST00000583164 216 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 BNIP3P8-201ENST00000597863 560 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 AC010680.3-201ENST00000604215 520 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 BCRP9-201ENST00000605312 388 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 AC011816.2-201ENST00000607089 556 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 AC006065.5-201ENST00000623427 349 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP88Q99567 AL392088.2-201ENST00000637607 285 ntBASIC4.8□□□□□ -1.64
NUP88Q99567 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP88Q99567 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NUP88Q99567 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NUP88Q99567 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.8□□□□□ -1.64
NUP88Q99567 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.8□□□□□ -1.64
NUP88Q99567 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
NUP88Q99567 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.8□□□□□ -1.64
NUP88Q99567 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP88Q99567 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.79□□□□□ -1.64
NUP88Q99567 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.79□□□□□ -1.64
NUP88Q99567 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.79□□□□□ -1.64
NUP88Q99567 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NUP88Q99567 RNA5SP258-201ENST00000362750 119 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 MIR513A2-201ENST00000385249 127 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 AL445189.1-201ENST00000405722 338 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 RNA5SP56-201ENST00000410277 118 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 Y_RNA.598-201ENST00000410480 95 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC4.79□□□□□ -1.64
NUP88Q99567 AC127526.1-201ENST00000417526 366 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC4.79□□□□□ -1.64
NUP88Q99567 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.79□□□□□ -1.64
NUP88Q99567 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.79□□□□□ -1.64
NUP88Q99567 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC4.79□□□□□ -1.64
NUP88Q99567 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC4.79□□□□□ -1.64
NUP88Q99567 RPS4XP4-201ENST00000443195 763 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 FAM103A2P-201ENST00000444122 354 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.79□□□□□ -1.64
NUP88Q99567 AC099563.1-201ENST00000456086 418 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 OR9M1P-201ENST00000459641 921 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms