Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC123904.3-201ENST00000547218 814 ntBASIC1.6□□□□□ -2.15
PRKDCP78527 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
PRKDCP78527 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
PRKDCP78527 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
PRKDCP78527 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
PRKDCP78527 RNU1-91P-201ENST00000364746 163 ntBASIC1.6□□□□□ -2.15
PRKDCP78527 SNORA41-201ENST00000384675 132 ntBASIC1.6□□□□□ -2.15
PRKDCP78527 AC002524.1-201ENST00000411687 547 ntBASIC1.6□□□□□ -2.15
PRKDCP78527 AC105402.2-201ENST00000438503 358 ntBASIC1.6□□□□□ -2.15
PRKDCP78527 AC245517.2-201ENST00000442890 346 ntBASIC1.6□□□□□ -2.15
PRKDCP78527 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC1.6□□□□□ -2.15
PRKDCP78527 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC1.6□□□□□ -2.15
PRKDCP78527 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC1.6□□□□□ -2.15
PRKDCP78527 AC025946.2-201ENST00000603398 234 ntBASIC1.6□□□□□ -2.15
PRKDCP78527 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
PRKDCP78527 AC011978.2-201ENST00000569835 2054 ntBASIC1.6□□□□□ -2.15
PRKDCP78527 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
PRKDCP78527 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC1.6□□□□□ -2.15
PRKDCP78527 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
PRKDCP78527 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
PRKDCP78527 RNU6-249P-201ENST00000363016 102 ntBASIC1.59□□□□□ -2.15
PRKDCP78527 EIF5P1-201ENST00000400019 1231 ntBASIC1.59□□□□□ -2.15
PRKDCP78527 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC1.59□□□□□ -2.15
PRKDCP78527 SDCBPP3-201ENST00000419629 891 ntBASIC1.59□□□□□ -2.15
PRKDCP78527 AC092427.1-202ENST00000430569 476 ntBASIC1.59□□□□□ -2.15
PRKDCP78527 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC1.59□□□□□ -2.15
PRKDCP78527 AC091515.1-201ENST00000548110 679 ntBASIC1.59□□□□□ -2.15
PRKDCP78527 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC1.59□□□□□ -2.15
PRKDCP78527 HSP90AA5P-201ENST00000438353 2192 ntBASIC1.59□□□□□ -2.15
PRKDCP78527 RNU1-75P-201ENST00000347264 129 ntBASIC1.59□□□□□ -2.15
PRKDCP78527 U8.10-201ENST00000384260 133 ntBASIC1.59□□□□□ -2.15
PRKDCP78527 OFD1P1Y-201ENST00000411756 1225 ntBASIC1.59□□□□□ -2.15
PRKDCP78527 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.59□□□□□ -2.15
PRKDCP78527 FABP5P13-201ENST00000452144 328 ntBASIC1.59□□□□□ -2.15
PRKDCP78527 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC1.59□□□□□ -2.15
PRKDCP78527 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC1.59□□□□□ -2.15
PRKDCP78527 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.59□□□□□ -2.15
PRKDCP78527 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
PRKDCP78527 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
PRKDCP78527 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
PRKDCP78527 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC1.59□□□□□ -2.15
PRKDCP78527 MIR21-201ENST00000362134 72 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC1.59□□□□□ -2.16
PRKDCP78527 RNU7-170P-201ENST00000459303 61 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 AC103975.1-201ENST00000482506 483 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 MIR6504-201ENST00000613520 61 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC1.59□□□□□ -2.16
PRKDCP78527 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC1.59□□□□□ -2.16
PRKDCP78527 PHKBP1-201ENST00000450951 1951 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.16
PRKDCP78527 SNORA25.6-201ENST00000364121 118 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 Y_RNA.327-201ENST00000365201 102 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 AC098826.1-201ENST00000433943 471 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC1.59□□□□□ -2.16
PRKDCP78527 AL590399.6-201ENST00000446396 307 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 RPS27P29-201ENST00000463110 252 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC1.59□□□□□ -2.16
PRKDCP78527 SCARNA16.3-201ENST00000516595 184 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.59□□□□□ -2.16
PRKDCP78527 PDCL2P2-201ENST00000533651 189 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 MIR4255-201ENST00000579351 72 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 AC083760.1-201ENST00000589621 670 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 AL391813.2-201ENST00000609113 322 ntBASIC1.59□□□□□ -2.16
PRKDCP78527 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
PRKDCP78527 UQCRFS1P3-201ENST00000407697 385 ntBASIC1.58□□□□□ -2.16
PRKDCP78527 AL023807.1-201ENST00000407932 359 ntBASIC1.58□□□□□ -2.16
PRKDCP78527 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC1.58□□□□□ -2.16
PRKDCP78527 AL121594.1-201ENST00000475906 575 ntBASIC1.58□□□□□ -2.16
PRKDCP78527 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.58□□□□□ -2.16
PRKDCP78527 MIR4644-201ENST00000579929 84 ntBASIC1.58□□□□□ -2.16
PRKDCP78527 AC002984.1-201ENST00000591692 448 ntBASIC1.58□□□□□ -2.16
PRKDCP78527 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC1.58□□□□□ -2.16
PRKDCP78527 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC1.58□□□□□ -2.16
PRKDCP78527 AC093536.2-201ENST00000565257 1406 ntBASIC1.58□□□□□ -2.16
PRKDCP78527 ZNF355P-201ENST00000427301 3216 ntBASIC1.58□□□□□ -2.16
PRKDCP78527 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
PRKDCP78527 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC1.58□□□□□ -2.16
PRKDCP78527 RNU2-6P-201ENST00000411404 190 ntBASIC1.58□□□□□ -2.16
PRKDCP78527 AL158825.1-201ENST00000414735 521 ntBASIC1.58□□□□□ -2.16
PRKDCP78527 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC1.58□□□□□ -2.16
PRKDCP78527 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.58□□□□□ -2.16
PRKDCP78527 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC1.58□□□□□ -2.16
PRKDCP78527 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.58□□□□□ -2.16
PRKDCP78527 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.58□□□□□ -2.16
PRKDCP78527 OR5D17P-201ENST00000531492 978 ntBASIC1.58□□□□□ -2.16
PRKDCP78527 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC1.58□□□□□ -2.16
PRKDCP78527 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
PRKDCP78527 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC1.58□□□□□ -2.16
PRKDCP78527 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
PRKDCP78527 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC1.58□□□□□ -2.16
PRKDCP78527 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
PRKDCP78527 AC092881.1-201ENST00000638218 2733 ntBASIC1.58□□□□□ -2.16
PRKDCP78527 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
PRKDCP78527 AC093010.3-201ENST00000570269 15214 ntBASIC1.58□□□□□ -2.16
PRKDCP78527 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC1.58□□□□□ -2.16
PRKDCP78527 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.58□□□□□ -2.16
PRKDCP78527 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.58□□□□□ -2.16
PRKDCP78527 AC125238.1-201ENST00000448842 249 ntBASIC1.58□□□□□ -2.16
PRKDCP78527 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC1.58□□□□□ -2.16
PRKDCP78527 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms