Protein–RNA interactions for Protein: Q9R060

Nubp1, Cytosolic Fe-S cluster assembly factor NUBP1, mousemouse

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nubp1Q9R060 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Zcchc6-207ENSMUST00000225576 2499 ntBASIC14.31□□□□□ -0.12
Nubp1Q9R060 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC14.31□□□□□ -0.12
Nubp1Q9R060 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
Nubp1Q9R060 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC14.31□□□□□ -0.12
Nubp1Q9R060 Gm29707-201ENSMUST00000196325 491 ntBASIC14.31□□□□□ -0.12
Nubp1Q9R060 AC124408.1-201ENSMUST00000228938 707 ntBASIC14.31□□□□□ -0.12
Nubp1Q9R060 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nubp1Q9R060 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Gm22119-201ENSMUST00000175594 99 ntBASIC14.3□□□□□ -0.12
Nubp1Q9R060 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Gm29331-201ENSMUST00000187215 605 ntTSL 5 BASIC14.3□□□□□ -0.12
Nubp1Q9R060 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 AC160338.1-201ENSMUST00000214232 705 ntBASIC14.3□□□□□ -0.12
Nubp1Q9R060 AU017674-201ENSMUST00000222864 720 ntTSL 3 BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nubp1Q9R060 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Gm13366-201ENSMUST00000122198 970 ntBASIC14.29□□□□□ -0.12
Nubp1Q9R060 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC14.29□□□□□ -0.12
Nubp1Q9R060 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Crisp4-201ENSMUST00000026876 1252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Gm43272-201ENSMUST00000200599 1584 ntBASIC14.29□□□□□ -0.12
Nubp1Q9R060 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Gm5898-201ENSMUST00000121016 2071 ntBASIC14.29□□□□□ -0.12
Nubp1Q9R060 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nubp1Q9R060 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nubp1Q9R060 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms