Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
Upf1Q9EPU0 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf1Q9EPU0 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Upf1Q9EPU0 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Upf1Q9EPU0 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC18.56■□□□□ 0.56
Upf1Q9EPU0 Gm9682-201ENSMUST00000197505 556 ntBASIC18.56■□□□□ 0.56
Upf1Q9EPU0 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC18.56■□□□□ 0.56
Upf1Q9EPU0 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf1Q9EPU0 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Upf1Q9EPU0 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC18.56■□□□□ 0.56
Upf1Q9EPU0 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf1Q9EPU0 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf1Q9EPU0 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf1Q9EPU0 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf1Q9EPU0 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Gm25287-201ENSMUST00000103846 110 ntBASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Gm22918-201ENSMUST00000103855 110 ntBASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Gm28631-201ENSMUST00000190740 334 ntBASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Syt7-205ENSMUST00000224135 1557 ntBASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf1Q9EPU0 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Gm13294-201ENSMUST00000121757 1330 ntBASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Gm6018-201ENSMUST00000216090 1306 ntBASIC18.54■□□□□ 0.56
Upf1Q9EPU0 AC132265.1-201ENSMUST00000219233 1665 ntBASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Rpph1-201ENSMUST00000175096 319 ntBASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Gm17837-201ENSMUST00000186435 985 ntBASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Gm43630-201ENSMUST00000201550 776 ntBASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf1Q9EPU0 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf1Q9EPU0 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Upf1Q9EPU0 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Upf1Q9EPU0 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC18.53■□□□□ 0.56
Upf1Q9EPU0 AC153962.4-201ENSMUST00000217878 242 ntBASIC18.53■□□□□ 0.56
Upf1Q9EPU0 Thap2-203ENSMUST00000218989 527 ntBASIC18.53■□□□□ 0.56
Upf1Q9EPU0 AC131710.1-201ENSMUST00000228336 990 ntBASIC18.53■□□□□ 0.56
Upf1Q9EPU0 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf1Q9EPU0 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Upf1Q9EPU0 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf1Q9EPU0 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Upf1Q9EPU0 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf1Q9EPU0 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf1Q9EPU0 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf1Q9EPU0 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf1Q9EPU0 Gm15693-201ENSMUST00000120470 637 ntBASIC18.52■□□□□ 0.56
Upf1Q9EPU0 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC18.52■□□□□ 0.56
Upf1Q9EPU0 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf1Q9EPU0 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Upf1Q9EPU0 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC18.52■□□□□ 0.56
Upf1Q9EPU0 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC18.52■□□□□ 0.56
Upf1Q9EPU0 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC18.52■□□□□ 0.56
Upf1Q9EPU0 Gm18057-201ENSMUST00000208220 503 ntBASIC18.52■□□□□ 0.56
Upf1Q9EPU0 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf1Q9EPU0 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf1Q9EPU0 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf1Q9EPU0 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf1Q9EPU0 Gm43213-201ENSMUST00000151866 1790 ntBASIC18.52■□□□□ 0.55
Upf1Q9EPU0 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Upf1Q9EPU0 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Upf1Q9EPU0 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Upf1Q9EPU0 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Upf1Q9EPU0 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf1Q9EPU0 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf1Q9EPU0 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Upf1Q9EPU0 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Upf1Q9EPU0 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Upf1Q9EPU0 Gm4609-201ENSMUST00000106443 1002 ntBASIC18.51■□□□□ 0.55
Upf1Q9EPU0 Gm5138-201ENSMUST00000113842 1002 ntBASIC18.51■□□□□ 0.55
Upf1Q9EPU0 Gm15191-201ENSMUST00000117933 1000 ntBASIC18.51■□□□□ 0.55
Upf1Q9EPU0 Gm12182-201ENSMUST00000118655 1008 ntBASIC18.51■□□□□ 0.55
Upf1Q9EPU0 Gm14928-201ENSMUST00000120198 477 ntBASIC18.51■□□□□ 0.55
Upf1Q9EPU0 Gm13882-201ENSMUST00000120886 1002 ntBASIC18.51■□□□□ 0.55
Upf1Q9EPU0 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms