Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Vps28Q9D1C8 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Gm17807-201ENSMUST00000186869 298 ntBASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps28Q9D1C8 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Otx2os1-206ENSMUST00000228153 787 ntBASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Gm8839-201ENSMUST00000121279 1645 ntBASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps28Q9D1C8 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps28Q9D1C8 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps28Q9D1C8 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Vps28Q9D1C8 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC16.72■□□□□ 0.27
Vps28Q9D1C8 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps28Q9D1C8 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms