Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Dio3-201ENSMUST00000097228 1449 ntBASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rpa1Q8VEE4 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Gm42545-201ENSMUST00000202755 922 ntBASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Gm18025-201ENSMUST00000221733 862 ntBASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 AC122769.4-201ENSMUST00000228166 901 ntBASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 AC154412.1-201ENSMUST00000226540 2786 ntBASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rpa1Q8VEE4 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rpa1Q8VEE4 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rpa1Q8VEE4 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rpa1Q8VEE4 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rpa1Q8VEE4 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rpa1Q8VEE4 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC16.52■□□□□ 0.24
Rpa1Q8VEE4 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
Rpa1Q8VEE4 Gm10517-202ENSMUST00000192970 758 ntBASIC16.52■□□□□ 0.24
Rpa1Q8VEE4 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC16.52■□□□□ 0.24
Rpa1Q8VEE4 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rpa1Q8VEE4 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rpa1Q8VEE4 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rpa1Q8VEE4 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rpa1Q8VEE4 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
Rpa1Q8VEE4 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Rpa1Q8VEE4 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Rpa1Q8VEE4 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC16.52■□□□□ 0.23
Rpa1Q8VEE4 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Rpa1Q8VEE4 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Rpa1Q8VEE4 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Rpa1Q8VEE4 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Rpa1Q8VEE4 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
Rpa1Q8VEE4 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Prob1-201ENSMUST00000097619 3021 ntBASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Rpa1Q8VEE4 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rpa1Q8VEE4 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms