Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Gm7977-201ENSMUST00000193787 748 ntBASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Gm28265-201ENSMUST00000188201 2319 ntBASIC19.77■□□□□ 0.76
Brf1Q8CFK2 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Brf1Q8CFK2 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Brf1Q8CFK2 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC19.77■□□□□ 0.76
Brf1Q8CFK2 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Brf1Q8CFK2 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Brf1Q8CFK2 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Brf1Q8CFK2 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Brf1Q8CFK2 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Brf1Q8CFK2 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Brf1Q8CFK2 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC19.77■□□□□ 0.76
Brf1Q8CFK2 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Brf1Q8CFK2 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Brf1Q8CFK2 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Brf1Q8CFK2 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
Brf1Q8CFK2 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Gm36967-201ENSMUST00000193814 266 ntBASIC19.76■□□□□ 0.75
Brf1Q8CFK2 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC19.76■□□□□ 0.75
Brf1Q8CFK2 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Brf1Q8CFK2 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Gm37166-201ENSMUST00000195473 2474 ntBASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Brf1Q8CFK2 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms