Protein–RNA interactions for Protein: Q8C2S0

Usp44, Ubiquitin carboxyl-terminal hydrolase 44, mousemouse

Predictions only

Length 711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp44Q8C2S0 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp44Q8C2S0 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC19.19■□□□□ 0.66
Usp44Q8C2S0 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp44Q8C2S0 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Usp44Q8C2S0 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Usp44Q8C2S0 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Ighv6-1-201ENSMUST00000193612 343 ntBASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 AC130713.1-201ENSMUST00000228853 1096 ntBASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 AC132265.1-201ENSMUST00000219233 1665 ntBASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp44Q8C2S0 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Gm27704-201ENSMUST00000185094 107 ntBASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Gm33142-201ENSMUST00000193913 867 ntBASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Usp44Q8C2S0 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Gm27742-201ENSMUST00000184667 60 ntBASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Gm6858-201ENSMUST00000208582 1468 ntBASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp44Q8C2S0 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Usp44Q8C2S0 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Usp44Q8C2S0 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp44Q8C2S0 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp44Q8C2S0 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Usp44Q8C2S0 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp44Q8C2S0 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp44Q8C2S0 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC19.14■□□□□ 0.65
Usp44Q8C2S0 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp44Q8C2S0 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp44Q8C2S0 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC19.14■□□□□ 0.65
Usp44Q8C2S0 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms