Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Haglr-201ENSMUST00000100000 2085 ntBASIC23.04■■□□□ 1.28
Usp47Q8BY87 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
Usp47Q8BY87 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp47Q8BY87 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Mir8098-201ENSMUST00000184011 137 ntBASIC23.03■■□□□ 1.28
Usp47Q8BY87 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
Usp47Q8BY87 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Usp47Q8BY87 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Usp47Q8BY87 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
Usp47Q8BY87 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Usp47Q8BY87 AC164629.2-201ENSMUST00000217916 270 ntBASIC23.02■■□□□ 1.28
Usp47Q8BY87 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
Usp47Q8BY87 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
Usp47Q8BY87 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Usp47Q8BY87 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC23.02■■□□□ 1.28
Usp47Q8BY87 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Usp47Q8BY87 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
Usp47Q8BY87 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Usp47Q8BY87 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Gm13830-205ENSMUST00000201195 1155 ntBASIC23.01■■□□□ 1.27
Usp47Q8BY87 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 AC115863.1-201ENSMUST00000214815 1813 ntBASIC23.01■■□□□ 1.27
Usp47Q8BY87 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC23.01■■□□□ 1.27
Usp47Q8BY87 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC23.01■■□□□ 1.27
Usp47Q8BY87 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC23.01■■□□□ 1.27
Usp47Q8BY87 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC23■■□□□ 1.27
Usp47Q8BY87 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
Usp47Q8BY87 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC23■■□□□ 1.27
Usp47Q8BY87 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC23■■□□□ 1.27
Usp47Q8BY87 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
Usp47Q8BY87 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC23■■□□□ 1.27
Usp47Q8BY87 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
Usp47Q8BY87 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC23■■□□□ 1.27
Usp47Q8BY87 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC23■■□□□ 1.27
Usp47Q8BY87 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
Usp47Q8BY87 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Usp47Q8BY87 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC23■■□□□ 1.27
Usp47Q8BY87 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC23■■□□□ 1.27
Usp47Q8BY87 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC23■■□□□ 1.27
Usp47Q8BY87 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC23■■□□□ 1.27
Usp47Q8BY87 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC23■■□□□ 1.27
Usp47Q8BY87 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC23■■□□□ 1.27
Usp47Q8BY87 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Usp47Q8BY87 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
Usp47Q8BY87 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp47Q8BY87 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Usp47Q8BY87 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp47Q8BY87 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp47Q8BY87 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC22.99■■□□□ 1.27
Usp47Q8BY87 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp47Q8BY87 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Usp47Q8BY87 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp47Q8BY87 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp47Q8BY87 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC22.99■■□□□ 1.27
Usp47Q8BY87 Gm5864-201ENSMUST00000202263 970 ntBASIC22.99■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms