Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm4609-201ENSMUST00000106443 1002 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm5138-201ENSMUST00000113842 1002 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm15191-201ENSMUST00000117933 1000 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm12182-201ENSMUST00000118655 1008 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm13882-201ENSMUST00000120886 1002 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm10284-201ENSMUST00000145057 1005 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm10481-201ENSMUST00000179228 1002 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm2574-201ENSMUST00000181051 1002 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm3200-201ENSMUST00000181493 1002 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm8825-201ENSMUST00000182565 998 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm4518-201ENSMUST00000182638 718 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm8330-201ENSMUST00000182754 1008 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm4575-201ENSMUST00000182991 1002 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm8709-201ENSMUST00000183230 1012 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm10293-201ENSMUST00000076317 1002 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Gm6316-201ENSMUST00000082064 1020 ntBASIC19.21■□□□□ 0.67
Nup98Q6PFD9 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup98Q6PFD9 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Gm8344-201ENSMUST00000119813 856 ntBASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Gm11594-201ENSMUST00000122313 162 ntBASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Gm9727-201ENSMUST00000161387 555 ntBASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Gm5867-201ENSMUST00000063197 592 ntBASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup98Q6PFD9 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Gm7222-201ENSMUST00000117512 906 ntBASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Gm14494-201ENSMUST00000118786 435 ntBASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup98Q6PFD9 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Gm25911-201ENSMUST00000157621 56 ntBASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Nup98Q6PFD9 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.16■□□□□ 0.66
Nup98Q6PFD9 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC19.16■□□□□ 0.66
Nup98Q6PFD9 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nup98Q6PFD9 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms