Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chd4Q6PDQ2 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chd4Q6PDQ2 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Chd4Q6PDQ2 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC21.29■■□□□ 1
Chd4Q6PDQ2 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC21.29■■□□□ 1
Chd4Q6PDQ2 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC21.29■■□□□ 1
Chd4Q6PDQ2 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC21.29■■□□□ 1
Chd4Q6PDQ2 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC21.29■■□□□ 1
Chd4Q6PDQ2 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC21.29■■□□□ 1
Chd4Q6PDQ2 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chd4Q6PDQ2 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chd4Q6PDQ2 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Chd4Q6PDQ2 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Chd4Q6PDQ2 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC21.28■■□□□ 1
Chd4Q6PDQ2 Gm8344-201ENSMUST00000119813 856 ntBASIC21.28■■□□□ 1
Chd4Q6PDQ2 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Chd4Q6PDQ2 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Chd4Q6PDQ2 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Chd4Q6PDQ2 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Chd4Q6PDQ2 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Chd4Q6PDQ2 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Chd4Q6PDQ2 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Chd4Q6PDQ2 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC21.28■■□□□ 1
Chd4Q6PDQ2 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC21.27■■□□□ 1
Chd4Q6PDQ2 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
Chd4Q6PDQ2 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Chd4Q6PDQ2 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
Chd4Q6PDQ2 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Chd4Q6PDQ2 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Gm7229-201ENSMUST00000214719 1007 ntBASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Gm23935-201ENSMUST00000102303 57 ntBASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Gm24270-201ENSMUST00000102326 57 ntBASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Gm24245-201ENSMUST00000157318 57 ntBASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Gm44945-201ENSMUST00000206764 1187 ntBASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chd4Q6PDQ2 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Gm6257-201ENSMUST00000163864 910 ntBASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Bloc1s5-203ENSMUST00000224902 612 ntBASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Chd4Q6PDQ2 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC21.23■□□□□ 0.99
Chd4Q6PDQ2 Gm14822-201ENSMUST00000122247 291 ntBASIC21.23■□□□□ 0.99
Chd4Q6PDQ2 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC21.23■□□□□ 0.99
Chd4Q6PDQ2 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC21.23■□□□□ 0.99
Chd4Q6PDQ2 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chd4Q6PDQ2 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chd4Q6PDQ2 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms