Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col11a1Q61245 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Col11a1Q61245 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col11a1Q61245 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col11a1Q61245 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col11a1Q61245 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col11a1Q61245 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC18.26■□□□□ 0.51
Col11a1Q61245 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col11a1Q61245 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col11a1Q61245 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC18.25■□□□□ 0.51
Col11a1Q61245 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col11a1Q61245 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col11a1Q61245 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col11a1Q61245 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
Col11a1Q61245 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col11a1Q61245 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col11a1Q61245 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col11a1Q61245 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Col11a1Q61245 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC18.25■□□□□ 0.51
Col11a1Q61245 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col11a1Q61245 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col11a1Q61245 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC18.25■□□□□ 0.51
Col11a1Q61245 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col11a1Q61245 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col11a1Q61245 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Col11a1Q61245 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Col11a1Q61245 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC18.25■□□□□ 0.51
Col11a1Q61245 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Col11a1Q61245 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col11a1Q61245 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col11a1Q61245 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col11a1Q61245 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC18.24■□□□□ 0.51
Col11a1Q61245 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
Col11a1Q61245 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col11a1Q61245 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col11a1Q61245 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC18.24■□□□□ 0.51
Col11a1Q61245 Gm7787-201ENSMUST00000216858 688 ntBASIC18.24■□□□□ 0.51
Col11a1Q61245 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC18.24■□□□□ 0.51
Col11a1Q61245 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col11a1Q61245 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col11a1Q61245 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Col11a1Q61245 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Col11a1Q61245 Nrn1-204ENSMUST00000224323 1779 ntBASIC18.24■□□□□ 0.51
Col11a1Q61245 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col11a1Q61245 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col11a1Q61245 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col11a1Q61245 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col11a1Q61245 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC18.23■□□□□ 0.51
Col11a1Q61245 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col11a1Q61245 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col11a1Q61245 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col11a1Q61245 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col11a1Q61245 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.23■□□□□ 0.51
Col11a1Q61245 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.23■□□□□ 0.51
Col11a1Q61245 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.23■□□□□ 0.51
Col11a1Q61245 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col11a1Q61245 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col11a1Q61245 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Col11a1Q61245 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Col11a1Q61245 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col11a1Q61245 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Col11a1Q61245 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.23■□□□□ 0.51
Col11a1Q61245 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC18.23■□□□□ 0.51
Col11a1Q61245 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.23■□□□□ 0.51
Col11a1Q61245 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Col11a1Q61245 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col11a1Q61245 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col11a1Q61245 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col11a1Q61245 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Col11a1Q61245 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC18.22■□□□□ 0.51
Col11a1Q61245 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC18.22■□□□□ 0.51
Col11a1Q61245 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
Col11a1Q61245 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col11a1Q61245 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC18.22■□□□□ 0.51
Col11a1Q61245 AC157650.3-201ENSMUST00000225058 1476 ntBASIC18.22■□□□□ 0.51
Col11a1Q61245 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Col11a1Q61245 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col11a1Q61245 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col11a1Q61245 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Col11a1Q61245 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col11a1Q61245 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col11a1Q61245 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col11a1Q61245 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC18.21■□□□□ 0.51
Col11a1Q61245 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC18.21■□□□□ 0.51
Col11a1Q61245 Mir7023-201ENSMUST00000185093 64 ntBASIC18.21■□□□□ 0.51
Col11a1Q61245 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col11a1Q61245 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col11a1Q61245 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col11a1Q61245 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
Col11a1Q61245 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col11a1Q61245 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col11a1Q61245 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Col11a1Q61245 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC18.21■□□□□ 0.51
Col11a1Q61245 Gm43474-201ENSMUST00000196415 774 ntBASIC18.21■□□□□ 0.51
Col11a1Q61245 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC18.21■□□□□ 0.51
Col11a1Q61245 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col11a1Q61245 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col11a1Q61245 AC119177.1-201ENSMUST00000227647 1332 ntBASIC18.21■□□□□ 0.5
Col11a1Q61245 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Col11a1Q61245 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC18.21■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms