Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Gm9172-201ENSMUST00000212092 954 ntBASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 AV026068-213ENSMUST00000223675 1171 ntBASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 AC159093.1-201ENSMUST00000227779 380 ntBASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf3aQ3ULJ3 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Gm6550-201ENSMUST00000187574 993 ntBASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Gm8655-201ENSMUST00000221159 852 ntBASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Gm15590-201ENSMUST00000078419 552 ntBASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Gm19439-201ENSMUST00000198195 2273 ntBASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3aQ3ULJ3 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Gm25406-201ENSMUST00000157599 105 ntBASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3aQ3ULJ3 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Gm15467-201ENSMUST00000120582 445 ntBASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3aQ3ULJ3 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms