Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Mir6404-201ENSMUST00000183699 94 ntBASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 Gm37153-201ENSMUST00000193637 231 ntBASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 Gm44492-201ENSMUST00000197012 141 ntBASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddb1Q3U1J4 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ddb1Q3U1J4 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Ddb1Q3U1J4 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.91
Ddb1Q3U1J4 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm6858-201ENSMUST00000208582 1468 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm4609-201ENSMUST00000106443 1002 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm5138-201ENSMUST00000113842 1002 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm15191-201ENSMUST00000117933 1000 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm12182-201ENSMUST00000118655 1008 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm13882-201ENSMUST00000120886 1002 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm10284-201ENSMUST00000145057 1005 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 AA543401-201ENSMUST00000164248 1269 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm10481-201ENSMUST00000179228 1002 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm2574-201ENSMUST00000181051 1002 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm3200-201ENSMUST00000181493 1002 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm8825-201ENSMUST00000182565 998 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm4518-201ENSMUST00000182638 718 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm8330-201ENSMUST00000182754 1008 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm4575-201ENSMUST00000182991 1002 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm8709-201ENSMUST00000183230 1012 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 AC154572.2-201ENSMUST00000225105 997 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm10293-201ENSMUST00000076317 1002 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Gm6316-201ENSMUST00000082064 1020 ntBASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddb1Q3U1J4 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms