Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
Ptchd3Q0EEE2 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Ptchd3Q0EEE2 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ptchd3Q0EEE2 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ptchd3Q0EEE2 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ptchd3Q0EEE2 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
Ptchd3Q0EEE2 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ptchd3Q0EEE2 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
Ptchd3Q0EEE2 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ptchd3Q0EEE2 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ptchd3Q0EEE2 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Gm7712-202ENSMUST00000222331 1510 ntBASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ptchd3Q0EEE2 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Ptchd3Q0EEE2 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Ptchd3Q0EEE2 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Ptchd3Q0EEE2 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC15.83■□□□□ 0.13
Ptchd3Q0EEE2 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Ptchd3Q0EEE2 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC15.83■□□□□ 0.13
Ptchd3Q0EEE2 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Ptchd3Q0EEE2 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Gm12085-201ENSMUST00000119263 940 ntBASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Gm24841-201ENSMUST00000158676 357 ntBASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Gm5297-201ENSMUST00000198555 1171 ntBASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 AC175538.1-201ENSMUST00000225343 1269 ntBASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ptchd3Q0EEE2 Gm9867-201ENSMUST00000192212 2647 ntBASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 AC107711.5-202ENSMUST00000226429 702 ntBASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ptchd3Q0EEE2 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Ptchd3Q0EEE2 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms