Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Col1a1P11087 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC19.08■□□□□ 0.64
Col1a1P11087 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC19.08■□□□□ 0.64
Col1a1P11087 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
Col1a1P11087 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col1a1P11087 Gm8784-201ENSMUST00000222096 1435 ntBASIC19.07■□□□□ 0.64
Col1a1P11087 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.07■□□□□ 0.64
Col1a1P11087 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC19.07■□□□□ 0.64
Col1a1P11087 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC19.07■□□□□ 0.64
Col1a1P11087 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC19.07■□□□□ 0.64
Col1a1P11087 AC159295.1-201ENSMUST00000225326 940 ntBASIC19.07■□□□□ 0.64
Col1a1P11087 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col1a1P11087 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
Col1a1P11087 Gm8396-201ENSMUST00000057361 823 ntBASIC19.07■□□□□ 0.64
Col1a1P11087 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col1a1P11087 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col1a1P11087 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC19.07■□□□□ 0.64
Col1a1P11087 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Col1a1P11087 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col1a1P11087 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col1a1P11087 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col1a1P11087 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col1a1P11087 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC19.06■□□□□ 0.64
Col1a1P11087 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC19.06■□□□□ 0.64
Col1a1P11087 AC159114.1-201ENSMUST00000220349 266 ntBASIC19.06■□□□□ 0.64
Col1a1P11087 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Col1a1P11087 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Col1a1P11087 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Col1a1P11087 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col1a1P11087 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col1a1P11087 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Col1a1P11087 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col1a1P11087 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Col1a1P11087 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col1a1P11087 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
Col1a1P11087 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC19.05■□□□□ 0.64
Col1a1P11087 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col1a1P11087 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col1a1P11087 Gm14701-201ENSMUST00000117156 348 ntBASIC19.05■□□□□ 0.64
Col1a1P11087 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col1a1P11087 AC158982.1-201ENSMUST00000228377 901 ntBASIC19.05■□□□□ 0.64
Col1a1P11087 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col1a1P11087 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Col1a1P11087 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col1a1P11087 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col1a1P11087 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col1a1P11087 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col1a1P11087 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col1a1P11087 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col1a1P11087 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col1a1P11087 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col1a1P11087 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col1a1P11087 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
Col1a1P11087 Gm27300-201ENSMUST00000184085 97 ntBASIC19.04■□□□□ 0.64
Col1a1P11087 Gm27335-201ENSMUST00000184758 97 ntBASIC19.04■□□□□ 0.64
Col1a1P11087 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Col1a1P11087 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col1a1P11087 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col1a1P11087 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Col1a1P11087 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col1a1P11087 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col1a1P11087 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC19.04■□□□□ 0.64
Col1a1P11087 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col1a1P11087 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Col1a1P11087 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC19.04■□□□□ 0.64
Col1a1P11087 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col1a1P11087 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC19.04■□□□□ 0.64
Col1a1P11087 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Col1a1P11087 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC19.03■□□□□ 0.64
Col1a1P11087 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Col1a1P11087 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC19.03■□□□□ 0.64
Col1a1P11087 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col1a1P11087 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Col1a1P11087 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col1a1P11087 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col1a1P11087 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col1a1P11087 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col1a1P11087 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col1a1P11087 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col1a1P11087 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC19.03■□□□□ 0.64
Col1a1P11087 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col1a1P11087 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC19.03■□□□□ 0.64
Col1a1P11087 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col1a1P11087 Gm44872-201ENSMUST00000207864 420 ntBASIC19.03■□□□□ 0.64
Col1a1P11087 AC154572.2-201ENSMUST00000225105 997 ntBASIC19.03■□□□□ 0.64
Col1a1P11087 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col1a1P11087 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col1a1P11087 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col1a1P11087 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col1a1P11087 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col1a1P11087 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC19.02■□□□□ 0.64
Col1a1P11087 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.02■□□□□ 0.64
Col1a1P11087 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Col1a1P11087 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col1a1P11087 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col1a1P11087 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col1a1P11087 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC19.02■□□□□ 0.63
Col1a1P11087 Gm8344-201ENSMUST00000119813 856 ntBASIC19.02■□□□□ 0.63
Col1a1P11087 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col1a1P11087 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms