Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.62■□□□□ 0.41
Vti1aO89116 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Vti1aO89116 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.62■□□□□ 0.41
Vti1aO89116 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.62■□□□□ 0.41
Vti1aO89116 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
Vti1aO89116 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.62■□□□□ 0.41
Vti1aO89116 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vti1aO89116 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Vti1aO89116 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vti1aO89116 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vti1aO89116 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.61■□□□□ 0.41
Vti1aO89116 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC17.61■□□□□ 0.41
Vti1aO89116 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vti1aO89116 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Vti1aO89116 Gm13884-201ENSMUST00000118103 829 ntBASIC17.61■□□□□ 0.41
Vti1aO89116 Gm43514-201ENSMUST00000198852 424 ntBASIC17.61■□□□□ 0.41
Vti1aO89116 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.61■□□□□ 0.41
Vti1aO89116 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Vti1aO89116 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Vti1aO89116 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Vti1aO89116 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vti1aO89116 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vti1aO89116 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vti1aO89116 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC17.61■□□□□ 0.41
Vti1aO89116 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Vti1aO89116 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vti1aO89116 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vti1aO89116 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vti1aO89116 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vti1aO89116 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vti1aO89116 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Vti1aO89116 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vti1aO89116 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vti1aO89116 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.6■□□□□ 0.41
Vti1aO89116 AC125350.1-201ENSMUST00000225115 903 ntBASIC17.6■□□□□ 0.41
Vti1aO89116 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vti1aO89116 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vti1aO89116 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vti1aO89116 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.6■□□□□ 0.41
Vti1aO89116 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vti1aO89116 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Vti1aO89116 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Vti1aO89116 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vti1aO89116 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Vti1aO89116 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Vti1aO89116 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Vti1aO89116 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Vti1aO89116 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.59■□□□□ 0.41
Vti1aO89116 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Vti1aO89116 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Vti1aO89116 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vti1aO89116 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Vti1aO89116 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Vti1aO89116 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Vti1aO89116 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Vti1aO89116 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Vti1aO89116 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC17.58■□□□□ 0.41
Vti1aO89116 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Vti1aO89116 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Vti1aO89116 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vti1aO89116 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Vti1aO89116 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
Vti1aO89116 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vti1aO89116 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.58■□□□□ 0.4
Vti1aO89116 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC17.58■□□□□ 0.4
Vti1aO89116 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC17.58■□□□□ 0.4
Vti1aO89116 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.58■□□□□ 0.4
Vti1aO89116 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC17.58■□□□□ 0.4
Vti1aO89116 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.58■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms