Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 ATG10-AS1-201ENST00000504846 648 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 TMEM248P1-201ENST00000510579 951 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 RNU2-58P-201ENST00000516403 183 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.28□□□□□ -2.04
SCN3AQ9NY46 MAGOH2P-202ENST00000584384 429 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 AC069304.3-201ENST00000603938 1084 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 AC013412.1-201ENST00000610687 192 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 U4.3-201ENST00000621047 82 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 AC025034.2-201ENST00000623264 286 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.28□□□□□ -2.04
SCN3AQ9NY46 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
SCN3AQ9NY46 FAM35CP-201ENST00000554755 2470 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 AC110774.1-201ENST00000623567 2018 ntBASIC2.28□□□□□ -2.05
SCN3AQ9NY46 CNOT6LP1-201ENST00000559681 1462 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
SCN3AQ9NY46 MTCO1P24-201ENST00000515438 1558 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
SCN3AQ9NY46 UBE2V2P1-201ENST00000434717 398 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 MTCYBP12-201ENST00000440559 1134 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.27□□□□□ -2.05
SCN3AQ9NY46 MTCYBP14-201ENST00000457471 715 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 VN1R17P-201ENST00000472048 1090 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC2.27□□□□□ -2.05
SCN3AQ9NY46 AC108120.2-201ENST00000512973 294 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 RN7SKP82-201ENST00000516786 223 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 OR4A45P-201ENST00000529954 901 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 AC021269.2-201ENST00000532318 330 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC2.27□□□□□ -2.05
SCN3AQ9NY46 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.27□□□□□ -2.05
SCN3AQ9NY46 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.27□□□□□ -2.05
SCN3AQ9NY46 AC117490.2-201ENST00000610042 594 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 AL359757.2-201ENST00000624309 274 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 MIR4496-201ENST00000635896 61 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
SCN3AQ9NY46 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.27□□□□□ -2.05
SCN3AQ9NY46 RNA5SP344-201ENST00000411081 104 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 XKRYP4-201ENST00000414395 483 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 MTCO2P17-201ENST00000424336 677 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 AC018634.1-201ENST00000437554 401 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 BUD31P2-201ENST00000449374 300 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 XKRYP5-201ENST00000449659 483 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC2.27□□□□□ -2.05
SCN3AQ9NY46 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.27□□□□□ -2.05
SCN3AQ9NY46 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC2.27□□□□□ -2.05
SCN3AQ9NY46 BX664608.1-201ENST00000610519 487 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 AL354950.1-201ENST00000614150 568 ntBASIC2.27□□□□□ -2.05
SCN3AQ9NY46 AC006378.2-201ENST00000623178 2476 ntBASIC2.26□□□□□ -2.05
SCN3AQ9NY46 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
SCN3AQ9NY46 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
SCN3AQ9NY46 MIR21-201ENST00000362134 72 ntBASIC2.26□□□□□ -2.05
SCN3AQ9NY46 RNA5SP181-201ENST00000410246 98 ntBASIC2.26□□□□□ -2.05
SCN3AQ9NY46 ATG3P1-201ENST00000419507 911 ntBASIC2.26□□□□□ -2.05
SCN3AQ9NY46 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC2.26□□□□□ -2.05
SCN3AQ9NY46 MTCO3P17-201ENST00000443775 513 ntBASIC2.26□□□□□ -2.05
SCN3AQ9NY46 RPS27P5-201ENST00000444247 244 ntBASIC2.26□□□□□ -2.05
SCN3AQ9NY46 RPL9P32-201ENST00000464118 620 ntBASIC2.26□□□□□ -2.05
SCN3AQ9NY46 AC128713.1-201ENST00000471495 306 ntBASIC2.26□□□□□ -2.05
SCN3AQ9NY46 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC2.26□□□□□ -2.05
SCN3AQ9NY46 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.26□□□□□ -2.05
SCN3AQ9NY46 RNU1-41P-201ENST00000516161 162 ntBASIC2.26□□□□□ -2.05
SCN3AQ9NY46 RNU1-48P-201ENST00000516400 162 ntBASIC2.26□□□□□ -2.05
SCN3AQ9NY46 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC2.26□□□□□ -2.05
SCN3AQ9NY46 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC2.26□□□□□ -2.05
SCN3AQ9NY46 AC007938.3-201ENST00000604965 623 ntBASIC2.26□□□□□ -2.05
SCN3AQ9NY46 AC107294.1-201ENST00000609524 467 ntBASIC2.26□□□□□ -2.05
SCN3AQ9NY46 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
SCN3AQ9NY46 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 SNORA70B-201ENST00000384210 135 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 RPS4XP7-201ENST00000406274 780 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 DHFRP5-201ENST00000406944 564 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 CR769767.1-201ENST00000436337 346 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 MTND3P6-201ENST00000485242 339 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 AC010297.1-201ENST00000623948 149 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 AC016717.2-201ENST00000609089 5141 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 U8.9-201ENST00000365667 134 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 RNA5SP425-201ENST00000410336 112 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 AL139415.2-201ENST00000431968 163 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 AL392003.1-201ENST00000434394 243 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 RPS7P5-201ENST00000441482 581 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 ARL5AP2-201ENST00000444698 533 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 AC233982.1-201ENST00000451247 436 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 RPL21P103-201ENST00000479921 488 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 MTND4LP22-201ENST00000508209 276 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 AC092435.3-201ENST00000565538 3654 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 MTND4P34-201ENST00000572715 1371 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms