Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SNORA71B-202ENST00000439232 272 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AL606662.1-201ENST00000445763 553 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 RPL21P23-201ENST00000446654 460 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC073387.1-201ENST00000453261 709 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 DNAJC19P1-201ENST00000455312 319 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 SNORD105B-201ENST00000458770 79 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC026410.2-201ENST00000460281 156 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC084198.1-201ENST00000477747 402 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 NCOR1P1-202ENST00000486162 291 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 SETP14-201ENST00000497538 873 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 RNA5SP208-201ENST00000516156 78 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC104986.1-201ENST00000517978 436 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 MIR4999-201ENST00000585029 91 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC103881.1-201ENST00000603476 538 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AL163642.2-201ENST00000604722 1019 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC243773.3-201ENST00000613270 256 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AL354976.1-201ENST00000613843 387 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 C2orf27A-204ENST00000623058 969 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC004943.3-201ENST00000624116 600 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 MTCO1P23-201ENST00000415223 1526 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 MFSD8-236ENST00000641509 4050 ntBASIC3.6□□□□□ -1.83
CCDC3Q9BQI4 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 RNVU1-14-201ENST00000384770 164 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 RNA5SP424-201ENST00000390988 115 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 AC012065.2-201ENST00000421295 375 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 RPL7P34-201ENST00000433316 712 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 AC073063.1-201ENST00000434352 607 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 HMGN2P21-201ENST00000447764 270 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 ARPC3P5-201ENST00000448802 534 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 MTND1P31-201ENST00000449206 961 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 RPS15AP17-201ENST00000470598 390 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 AL136126.1-201ENST00000473603 402 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 PTGES3P3-201ENST00000511479 482 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 DEFB131D-201ENST00000526803 184 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 ZNF321P-202ENST00000550843 495 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 AL512347.1-201ENST00000566420 503 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 MIR4644-201ENST00000579929 84 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 AC079684.1-201ENST00000621405 437 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 AC244258.1-201ENST00000637553 1071 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 AL392088.2-201ENST00000637607 285 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 OR6C71P-202ENST00000641886 1107 ntBASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
CCDC3Q9BQI4 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC3Q9BQI4 OR4G11P-202ENST00000642116 1414 ntBASIC3.59□□□□□ -1.84
CCDC3Q9BQI4 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC3Q9BQI4 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC3Q9BQI4 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 PRO1804-201ENST00000623780 2050 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC016769.3-201ENST00000396562 315 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 EIF5P1-201ENST00000400019 1231 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AL355379.1-201ENST00000405542 640 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 RNA5SP56-201ENST00000410277 118 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AMD1P2-201ENST00000412936 992 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 RPS7P15-201ENST00000415804 584 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC006548.1-201ENST00000427470 102 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 TXNL1P1-201ENST00000429528 554 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 MTATP6P17-201ENST00000431030 672 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 RPS25P9-201ENST00000435591 252 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AL356535.1-201ENST00000440335 398 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC006480.1-201ENST00000449887 378 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 TRBV12-2-201ENST00000489763 344 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AL358832.1-201ENST00000497800 389 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC108078.3-201ENST00000502633 489 ntBASIC3.58□□□□□ -1.84
CCDC3Q9BQI4 AC093767.1-201ENST00000504523 156 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms