Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 AL138880.2-201ENST00000616214 239 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 AC092650.2-201ENST00000619984 902 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
FOXA3P55318 AC020763.5-201ENST00000623298 430 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC2.01□□□□□ -2.09
FOXA3P55318 ZNF519P1-201ENST00000449011 1626 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.01□□□□□ -2.09
FOXA3P55318 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
FOXA3P55318 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
FOXA3P55318 AC093536.2-201ENST00000565257 1406 ntBASIC2□□□□□ -2.09
FOXA3P55318 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2□□□□□ -2.09
FOXA3P55318 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2□□□□□ -2.09
FOXA3P55318 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC2□□□□□ -2.09
FOXA3P55318 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC2□□□□□ -2.09
FOXA3P55318 AC112653.1-201ENST00000443851 386 ntBASIC2□□□□□ -2.09
FOXA3P55318 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2□□□□□ -2.09
FOXA3P55318 AL590664.1-201ENST00000448065 339 ntBASIC2□□□□□ -2.09
FOXA3P55318 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2□□□□□ -2.09
FOXA3P55318 PDSS1P2-201ENST00000449397 678 ntBASIC2□□□□□ -2.09
FOXA3P55318 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC2□□□□□ -2.09
FOXA3P55318 RNA5SP310-201ENST00000459084 116 ntBASIC2□□□□□ -2.09
FOXA3P55318 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2□□□□□ -2.09
FOXA3P55318 RPL32P34-201ENST00000486380 400 ntBASIC2□□□□□ -2.09
FOXA3P55318 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC2□□□□□ -2.09
FOXA3P55318 CDC42P4-201ENST00000510507 563 ntBASIC2□□□□□ -2.09
FOXA3P55318 RAC1P5-201ENST00000512182 576 ntBASIC2□□□□□ -2.09
FOXA3P55318 SCGB1D5P-201ENST00000515134 247 ntBASIC2□□□□□ -2.09
FOXA3P55318 SNORA74D-201ENST00000516404 141 ntBASIC2□□□□□ -2.09
FOXA3P55318 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC2□□□□□ -2.09
FOXA3P55318 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC2□□□□□ -2.09
FOXA3P55318 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2□□□□□ -2.09
FOXA3P55318 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC2□□□□□ -2.09
FOXA3P55318 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2□□□□□ -2.09
FOXA3P55318 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2□□□□□ -2.09
FOXA3P55318 NTAN1P1-201ENST00000603150 646 ntBASIC2□□□□□ -2.09
FOXA3P55318 AC135178.6-201ENST00000605314 398 ntBASIC2□□□□□ -2.09
FOXA3P55318 AC073111.2-201ENST00000605657 1075 ntBASIC2□□□□□ -2.09
FOXA3P55318 AC104237.2-201ENST00000612456 443 ntBASIC2□□□□□ -2.09
FOXA3P55318 MIR7112-201ENST00000616126 65 ntBASIC2□□□□□ -2.09
FOXA3P55318 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2□□□□□ -2.09
FOXA3P55318 AC095031.1-201ENST00000623685 672 ntBASIC2□□□□□ -2.09
FOXA3P55318 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2□□□□□ -2.09
FOXA3P55318 CUL1P1-201ENST00000509510 2425 ntBASIC2□□□□□ -2.09
FOXA3P55318 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2□□□□□ -2.09
FOXA3P55318 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
FOXA3P55318 AC011460.1-201ENST00000636268 1834 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
FOXA3P55318 MIR200C-201ENST00000384980 68 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 U3.19-201ENST00000390893 196 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 RPS4XP3-201ENST00000398541 413 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA3P55318 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA3P55318 AC080125.1-201ENST00000414888 684 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 RPLP0P7-201ENST00000416050 667 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 RPL36AP36-201ENST00000418616 301 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA3P55318 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC1.99□□□□□ -2.09
FOXA3P55318 AC092427.1-202ENST00000430569 476 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 AL159987.2-201ENST00000432754 307 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 AC112220.1-201ENST00000434628 355 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 RPS20P5-201ENST00000434808 360 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA3P55318 MTCYBP34-201ENST00000439552 670 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA3P55318 AC083906.5-201ENST00000503722 328 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC1.99□□□□□ -2.09
FOXA3P55318 AC006499.5-201ENST00000505037 514 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA3P55318 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC1.99□□□□□ -2.09
FOXA3P55318 AC133963.2-201ENST00000513686 578 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 RNU1-104P-201ENST00000517280 175 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA3P55318 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
FOXA3P55318 AC093014.1-201ENST00000548926 724 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA3P55318 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA3P55318 MTCYBP28-201ENST00000566728 1132 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA3P55318 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA3P55318 AC093227.2-201ENST00000589357 285 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA3P55318 AC245389.1-201ENST00000605141 529 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 AL137847.3-201ENST00000611521 109 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC1.99□□□□□ -2.09
FOXA3P55318 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC1.99□□□□□ -2.09
FOXA3P55318 AC009950.2-201ENST00000636548 183 ntBASIC1.99□□□□□ -2.09
FOXA3P55318 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC1.99□□□□□ -2.09
FOXA3P55318 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC1.99□□□□□ -2.09
FOXA3P55318 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.99□□□□□ -2.09
FOXA3P55318 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.99□□□□□ -2.09
FOXA3P55318 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
FOXA3P55318 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC1.98□□□□□ -2.09
FOXA3P55318 MTCO1P12-201ENST00000414273 1543 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
FOXA3P55318 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
FOXA3P55318 RNA5SP252-201ENST00000391131 119 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 PTMAP2-201ENST00000397627 327 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
FOXA3P55318 FAT1P1-201ENST00000406588 507 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms