Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC067852.3-201ENST00000589177 561 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC007566.2-201ENST00000603642 413 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC025588.3-201ENST00000604182 274 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AL445435.1-201ENST00000604232 665 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AL590282.1-201ENST00000610379 1136 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC024941.1-201ENST00000612250 334 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC090116.1-201ENST00000615679 446 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC103798.2-201ENST00000624292 632 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC068724.3-201ENST00000625906 87 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 AC009093.8-201ENST00000641769 292 ntBASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
CCDC54Q8NEL0 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AL049781.1-201ENST00000623195 3585 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 SNORD56.3-201ENST00000363507 71 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 RNU6-339P-201ENST00000384310 107 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 MIR122-201ENST00000385044 85 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 MIR887-201ENST00000401258 79 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AL133264.1-201ENST00000407157 562 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AL035410.1-201ENST00000427409 427 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 OR2AS1P-201ENST00000427827 319 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 ATP5JP1-201ENST00000431631 322 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AL035246.1-201ENST00000433554 1255 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC007389.2-201ENST00000434630 306 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 MTCYBP42-201ENST00000444653 1130 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 NPM1P13-201ENST00000452663 865 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 ACTR3P3-201ENST00000480448 893 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AL024509.2-201ENST00000493462 493 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 RNF138P1-201ENST00000502765 546 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 ARL4AP2-201ENST00000507378 601 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 SNORA48.10-201ENST00000516965 160 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 OR4A45P-201ENST00000529954 901 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC010653.1-201ENST00000571108 881 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC092953.2-201ENST00000608000 699 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC009237.15-201ENST00000610252 501 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AL591516.1-201ENST00000611326 274 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AL592148.2-201ENST00000612210 372 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AL157817.1-201ENST00000614264 790 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC009269.6-201ENST00000621778 588 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC243312.2-201ENST00000623340 601 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 AC244258.1-201ENST00000637553 1071 ntBASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC54Q8NEL0 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 RNU1-85P-201ENST00000364127 164 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 Y_RNA.493-201ENST00000384422 102 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 SNORD65.1-201ENST00000390889 71 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 SNORD17-201ENST00000390930 237 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 SNORA57.1-201ENST00000391227 145 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 SSXP10-201ENST00000402595 565 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 RPL7P27-201ENST00000403775 720 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AL445189.1-201ENST00000405722 338 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 RN7SKP123-201ENST00000410732 291 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC109780.2-201ENST00000413467 845 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 MRPL50P2-201ENST00000416821 482 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AL449283.1-202ENST00000418249 604 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC006960.1-201ENST00000419980 153 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms