Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPS27AP8-201ENST00000452665 445 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 USP9YP10-201ENST00000454868 628 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 SNRPGP5-201ENST00000456003 220 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 RPL7P1-201ENST00000468161 747 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 RPL7P9-201ENST00000468715 747 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC072039.1-201ENST00000477611 581 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC012170.1-201ENST00000495139 359 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 RPF2P2-201ENST00000504693 896 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 USP9YP5-201ENST00000511770 630 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 MTCO1P47-201ENST00000523889 1271 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 CBX3P5-201ENST00000552017 521 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 MIR3915-201ENST00000578518 97 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC010620.1-201ENST00000601088 1102 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 LLPHP1-201ENST00000603571 367 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC073530.2-201ENST00000623987 261 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 PCMTD1P7-201ENST00000634506 357 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 OR8B1P-202ENST00000641132 1178 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 IPO8P1-201ENST00000455509 3109 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
NKX3-1Q99801 GDI2P1-201ENST00000429312 1336 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC011477.1-204ENST00000623416 1325 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC073073.2-201ENST00000609827 2578 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
NKX3-1Q99801 NCAPGP1-201ENST00000505112 1814 ntBASIC3.4□□□□□ -1.87
NKX3-1Q99801 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
NKX3-1Q99801 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
NKX3-1Q99801 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
NKX3-1Q99801 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 RNU1-18P-201ENST00000363062 164 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 RNU6-289P-201ENST00000364093 107 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 Y_RNA.302-201ENST00000364997 102 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 RNA5SP88-201ENST00000365560 109 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
NKX3-1Q99801 HMGB1P17-201ENST00000403495 628 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 RNU4-78P-201ENST00000410940 126 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 AL049610.1-201ENST00000423374 372 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 RPL29P29-201ENST00000448725 423 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 RPL30P9-201ENST00000465586 330 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 RPL31P50-201ENST00000471002 296 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 SYPL1P1-201ENST00000473622 768 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
NKX3-1Q99801 AC005178.1-201ENST00000508392 440 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 PTGES3P3-201ENST00000511479 482 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 RNA5SP208-201ENST00000516156 78 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 RNU6-678P-201ENST00000516832 109 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 RN7SL600P-201ENST00000581811 299 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 AC005255.1-201ENST00000593748 216 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.39□□□□□ -1.87
NKX3-1Q99801 VN1R85P-201ENST00000601587 426 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 WISP1-OT1-201ENST00000602893 642 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 AC067959.1-201ENST00000604334 379 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 AC121247.2-201ENST00000604776 136 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 HMGN2P28-201ENST00000606102 262 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 AC093783.1-201ENST00000612976 329 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 uc_338.32-201ENST00000615087 172 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 MIR8059-201ENST00000620427 81 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 AF246928.1-201ENST00000623768 87 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 AC112484.5-201ENST00000624189 228 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
NKX3-1Q99801 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
NKX3-1Q99801 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
NKX3-1Q99801 NUP58P1-201ENST00000502546 1738 ntBASIC3.39□□□□□ -1.87
NKX3-1Q99801 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms