Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RPL32P28-201ENST00000443577 397 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 PRDX3P3-201ENST00000447765 522 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AL133445.1-201ENST00000467051 452 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 RN7SL188P-201ENST00000469842 285 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AL049874.1-201ENST00000489560 388 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AC105384.2-201ENST00000508433 640 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AC008526.1-201ENST00000509149 338 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AC093303.1-201ENST00000514549 295 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 RNU6-1332P-201ENST00000516666 104 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 SNORA31.20-201ENST00000517111 133 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 RNU6-323P-201ENST00000521915 107 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AC021006.3-201ENST00000530771 192 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 RGS4-209ENST00000531057 544 ntTSL 4 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AL163153.1-201ENST00000554223 283 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AL355836.1-201ENST00000555951 870 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 HMGB3P26-201ENST00000560051 582 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 MIR5690-201ENST00000583739 73 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 BDH2P1-201ENST00000602288 736 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 RNA5SP108-201ENST00000605921 117 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 MIR15A-201ENST00000607334 83 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AL138726.1-201ENST00000614873 333 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 MIR1910-201ENST00000636955 80 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 AC007159.1-201ENST00000566529 4706 ntBASIC4.51□□□□□ -1.69
CCDC140Q96MF4 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC140Q96MF4 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 ZNF519P1-201ENST00000449011 1626 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 RNU1-150P-201ENST00000362491 162 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 RNU5A-1-201ENST00000362698 116 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 Y_RNA.202-201ENST00000364083 110 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 Y_RNA.445-201ENST00000384168 102 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AL590704.1-201ENST00000402856 794 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AL121834.1-202ENST00000404494 277 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AL662874.1-201ENST00000426065 230 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 GPM6BP2-201ENST00000432046 144 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AL591704.1-201ENST00000432574 275 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 EIF5AP4-201ENST00000441206 465 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 GPM6BP1-201ENST00000446387 144 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 RPL12P39-201ENST00000455456 496 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 Y_RNA.639-201ENST00000458981 102 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 snoU13.29-201ENST00000459370 104 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 RN7SL72P-201ENST00000460697 269 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AC117503.1-201ENST00000472241 394 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AC090096.1-201ENST00000489168 390 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 RANP9-201ENST00000519957 271 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 IGLV3-30-201ENST00000524362 298 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AP004371.1-201ENST00000525240 214 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 ELOCP31-201ENST00000540463 467 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AC012119.1-201ENST00000603184 222 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 FAM157A-202ENST00000615155 405 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 AL031658.2-201ENST00000616850 651 ntBASIC4.5□□□□□ -1.69
CCDC140Q96MF4 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
CCDC140Q96MF4 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms