Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AC108161.1-201ENST00000461060 402 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 RPL9P6-201ENST00000492764 598 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AK3P4-201ENST00000504283 583 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AC010493.1-201ENST00000513479 292 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 RNU6-506P-201ENST00000516553 94 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 SNORA31.20-201ENST00000517111 133 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 SNORA43.3-201ENST00000517240 103 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 UBE2FP2-201ENST00000566646 462 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 CYP4A43P-201ENST00000568156 121 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AL512782.1-201ENST00000603093 364 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AC009597.2-201ENST00000604659 592 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AL592295.2-201ENST00000612578 206 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 AC093838.1-201ENST00000613014 469 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 MIR6778-201ENST00000617912 73 ntBASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC28AQ8IWP9 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 NXPH1-205ENST00000602349 1953 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 RNY3P13-201ENST00000365542 102 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 SNORA20.2-201ENST00000383922 131 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 RPL7P60-201ENST00000397636 735 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 DUTP5-201ENST00000406790 469 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 UBE2V1P10-201ENST00000414685 269 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 SSXP9-201ENST00000417503 292 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 RPS3P2-201ENST00000421346 701 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AL732292.1-201ENST00000426692 226 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AC133104.1-201ENST00000429100 218 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 C1DP4-201ENST00000455429 424 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 RPS23P6-201ENST00000466136 431 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 NDUFA5P5-201ENST00000468361 342 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AC058823.1-201ENST00000485315 474 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AC135721.1-201ENST00000497954 479 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 HMGB1P29-201ENST00000505659 499 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 SCARNA16.4-201ENST00000516956 187 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 RNA5SP337-201ENST00000517007 109 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 DEFB108D-201ENST00000527787 222 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 MED28P5-201ENST00000528254 438 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 MTCYBP41-201ENST00000528913 1123 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AC087481.2-201ENST00000565492 330 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 MRPS21P7-201ENST00000566937 238 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AC010928.3-201ENST00000587712 541 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AL499605.1-201ENST00000604628 403 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AC008277.2-201ENST00000605196 797 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 MIR98-201ENST00000606724 119 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AL603758.1-201ENST00000618654 241 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AL353748.2-201ENST00000622148 471 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AC019226.1-201ENST00000625666 515 ntBASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC28AQ8IWP9 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC28AQ8IWP9 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC28AQ8IWP9 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC28AQ8IWP9 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
CCDC28AQ8IWP9 DDX10P1-201ENST00000448545 1933 ntBASIC4.02□□□□□ -1.77
CCDC28AQ8IWP9 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC28AQ8IWP9 RNY1P12-201ENST00000364251 105 ntBASIC4.02□□□□□ -1.77
CCDC28AQ8IWP9 RNU6-882P-201ENST00000391025 103 ntBASIC4.02□□□□□ -1.77
CCDC28AQ8IWP9 U3.35-201ENST00000408405 208 ntBASIC4.02□□□□□ -1.77
CCDC28AQ8IWP9 RNA5SP345-201ENST00000410646 108 ntBASIC4.02□□□□□ -1.77
CCDC28AQ8IWP9 RN7SKP126-201ENST00000411143 300 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms